Package org.snpeff.gtex
Class Gtex
java.lang.Object
org.snpeff.gtex.Gtex
- All Implemented Interfaces:
Iterable<GtexExperiment>
Load data from GTEx files.
References: http://www.broadinstitute.org/gtex/
- Author:
- pcingola
-
Field Summary
Fields -
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionint
iterator()
void
protected void
Load data: Experimental (sometimes normalized) valuesprotected void
loadSamples
(String samples) Load samples namesvoid
setVerbose
(boolean verbose) toString()
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
Methods inherited from interface java.lang.Iterable
forEach, spliterator
-
Field Details
-
NA_VALUE
- See Also:
-
-
Constructor Details
-
Gtex
public Gtex()
-
-
Method Details
-
getGeneIds
-
getIndex
-
iterator
- Specified by:
iterator
in interfaceIterable<GtexExperiment>
-
load
-
loadData
Load data: Experimental (sometimes normalized) values- Parameters:
data
-
-
loadSamples
Load samples names- Parameters:
samples
-
-
setVerbose
public void setVerbose(boolean verbose) -
toString
-