Class CoverageChr

java.lang.Object
org.snpeff.coverage.CoverageChr
All Implemented Interfaces:
Serializable

public class CoverageChr extends Object implements Serializable
Base by base coverage (one chromsome)
Author:
pcingola
See Also:
  • Constructor Details

    • CoverageChr

      public CoverageChr(int len)
  • Method Details

    • avgCoverage

      public double avgCoverage(int start, int end)
      Calculate Coverage per base
      Returns:
      Average coverage per base
    • coverage

      public long coverage(int start, int end)
      Calculate Coverage per base
      Returns:
      Average coverage per base
    • getCount

      public short[] getCount()
    • inc

      public void inc(int start, int end)
      Increment a region
      Parameters:
      start -
      end -
    • toString

      public String toString()
      Overrides:
      toString in class Object