Normalization of intensities in a set of maps using robust regression.
| potential predecessor tools |  ConsensusMapNormalizer   | potential successor tools | 
| FeatureLinkerUnlabeled (or another feature grouping tool) | ProteinQuantifier | |
| TextExporter | 
The tool normalizes the intensities of a set of maps (consensusXML file). The following normalization algorithms are available:
The command line parameters of this tool are:
ConsensusMapNormalizer -- Normalizes maps of one consensusXML file
Version: 1.11.1 Nov 14 2013, 11:18:15, Revision: 11976
Usage:
  ConsensusMapNormalizer <options>
Options (mandatory options marked with '*'):
  -in <file>*               Input file (valid formats: 'consensusXML')
  -out <file>*              Output file (valid formats: 'consensusXML')
                            
  -algorithm_type <type>    The normalization algorithm that is applied. (default: 'robust_regression' valid:
                            'robust_regression', 'median', 'quantile')
  -ratio_threshold <ratio>  Only for 'robust_regression': the parameter is used to distinguish between non-ou
                            tliers (ratio_threshold < intensity ratio < 1/ratio_threshold) and outliers. (def
                            ault: '0.67' min: '0.001' max: '1')
                            
Common TOPP options:
  -ini <file>               Use the given TOPP INI file
  -threads <n>              Sets the number of threads allowed to be used by the TOPP tool (default: '1')
  -write_ini <file>         Writes the default configuration file
  --help                    Shows options
  --helphelp                Shows all options (including advanced)
INI file documentation of this tool:
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:24 using doxygen 1.8.5 |