35 #ifndef OPENMS_METADATA_PEPTIDEIDENTIFICATION_H 
   36 #define OPENMS_METADATA_PEPTIDEIDENTIFICATION_H 
   88     const std::vector<PeptideHit> & getHits() 
const;
 
   92     void setHits(
const std::vector<PeptideHit> & hits);
 
   97     void setSignificanceThreshold(
DoubleReal value);
 
  100     String getScoreType() 
const;
 
  102     void setScoreType(
const String & type);
 
  105     bool isHigherScoreBetter() 
const;
 
  107     void setHigherScoreBetter(
bool value);
 
  110     const String & getIdentifier() 
const;
 
  112     void setIdentifier(
const String & 
id);
 
  131     void getReferencingHits(
const String & protein_accession, std::vector<PeptideHit> & peptide_hits) 
const;
 
  134     void getReferencingHits(
const std::vector<String> & accessions, std::vector<PeptideHit> & peptide_hits) 
const;
 
  137     void getReferencingHits(
const std::vector<ProteinHit> & protein_hits, std::vector<PeptideHit> & peptide_hits) 
const;
 
  140     void getNonReferencingHits(
const String & protein_accession, std::vector<PeptideHit> & peptide_hits) 
const;
 
  141     void getNonReferencingHits(
const std::vector<String> & accessions, std::vector<PeptideHit> & peptide_hits) 
const;
 
  142     void getNonReferencingHits(
const std::vector<ProteinHit> & protein_hits, std::vector<PeptideHit> & peptide_hits) 
const;
 
  154 #endif // OPENMS_METADATA_PEPTIDEIDENTIFICATION_H 
A more convenient string class. 
Definition: String.h:56
String score_type_
The score type (Mascot, Sequest, e-value, p-value) 
Definition: PeptideIdentification.h:149
std::vector< PeptideHit > hits_
A list containing the peptide hits. 
Definition: PeptideIdentification.h:147
Representation of a peptide hit. 
Definition: PeptideHit.h:54
PeptideHit HitType
Hit type definition. 
Definition: PeptideIdentification.h:69
String id_
Identifier by which ProteinIdentification and PeptideIdentification are matched. 
Definition: PeptideIdentification.h:146
DoubleReal significance_threshold_
the peptide significance threshold 
Definition: PeptideIdentification.h:148
bool higher_score_better_
The score orientation. 
Definition: PeptideIdentification.h:150
Represents the peptide hits for a spectrum. 
Definition: PeptideIdentification.h:63