| add_modification_(std::vector< TargetedExperiment::Peptide::Modification > &mods, int location, ResidueModification &rmod, const String &name) | TransitionTSVReader | private | 
  | begin_ | ProgressLogger | mutableprotected | 
  | cleanUpTransition(TSVTransition &mytransition) | TransitionTSVReader | private | 
  | CMD enum value | ProgressLogger |  | 
  | convertTargetedExperimentToTSV(const char *filename, OpenMS::TargetedExperiment &targeted_exp) | TransitionTSVReader |  | 
  | convertTSVToTargetedExperiment(const char *filename, OpenMS::TargetedExperiment &targeted_exp) | TransitionTSVReader |  | 
  | createPeptide_(std::vector< TSVTransition >::iterator &tr_it, OpenMS::TargetedExperiment::Peptide &peptide) | TransitionTSVReader | private | 
  | createProtein_(std::vector< TSVTransition >::iterator &tr_it, OpenMS::TargetedExperiment::Protein &protein) | TransitionTSVReader | private | 
  | createTransition_(std::vector< TSVTransition >::iterator &tr_it, OpenMS::ReactionMonitoringTransition &rm_trans) | TransitionTSVReader | private | 
  | dlg_ | ProgressLogger | mutableprotected | 
  | end_ | ProgressLogger | mutableprotected | 
  | endProgress() const | ProgressLogger |  | 
  | getLogType() const | ProgressLogger |  | 
  | getTSVHeader(std::string &line, char &delimiter, std::vector< std::string > header, std::map< std::string, int > &header_dict) | TransitionTSVReader | private | 
  | GUI enum value | ProgressLogger |  | 
  | header_names | TransitionTSVReader | privatestatic | 
  | last_invoke_ | ProgressLogger | mutableprotected | 
  | LogType enum name | ProgressLogger |  | 
  | NONE enum value | ProgressLogger |  | 
  | PeptideVectorType typedef | TransitionTSVReader | private | 
  | ProgressLogger() | ProgressLogger |  | 
  | ProteinVectorType typedef | TransitionTSVReader | private | 
  | readTSVInput_(const char *filename, std::vector< TSVTransition > &transition_list) | TransitionTSVReader | private | 
  | readUnstructuredTSVInput_(const char *filename, std::vector< TSVTransition > &transition_list) | TransitionTSVReader | private | 
  | recursion_depth_ | ProgressLogger | protectedstatic | 
  | setLogType(LogType type) const | ProgressLogger |  | 
  | setProgress(SignedSize value) const | ProgressLogger |  | 
  | startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger |  | 
  | stop_watch_ | ProgressLogger | mutableprotected | 
  | strarray | TransitionTSVReader | privatestatic | 
  | TransitionVectorType typedef | TransitionTSVReader | private | 
  | TSVToTargetedExperiment_(std::vector< TSVTransition > &transition_list, OpenMS::TargetedExperiment &exp) | TransitionTSVReader | private | 
  | type_ | ProgressLogger | mutableprotected | 
  | validateTargetedExperiment(OpenMS::TargetedExperiment &targeted_exp) | TransitionTSVReader |  | 
  | value_ | ProgressLogger | mutableprotected | 
  | writeTSVOutput_(const char *filename, OpenMS::TargetedExperiment &targeted_exp) | TransitionTSVReader | private | 
  | ~ProgressLogger() | ProgressLogger |  |