| abort_(const Seed &seed, const String &reason) | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | inlineprotected | 
  | abort_reasons_ | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | aborts_ | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | ChargedIndexSet typedef | FeatureFinderDefs |  | 
  | check_defaults_ | DefaultParamHandler | protected | 
  | checkFeatureQuality_(TraceFitter< PeakType > *fitter, MassTraces &feature_traces, const DoubleReal &seed_mz, const DoubleReal &min_feature_score, String &error_msg, DoubleReal &fit_score, DoubleReal &correlation, DoubleReal &final_score) | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | inlineprotected | 
  | chooseTraceFitter_(double &tau) | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | inlineprotected | 
  | CoordinateType typedef | FeatureFinderAlgorithm< PeakType, FeatureType > |  | 
  | create() | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | inlinestatic | 
  | cropFeature_(TraceFitter< PeakType > *fitter, const MassTraces &traces, MassTraces &new_traces) | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | inlineprotected | 
  | debug_ | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | DefaultParamHandler(const String &name) | DefaultParamHandler |  | 
  | DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |  | 
  | defaults_ | DefaultParamHandler | protected | 
  | defaultsToParam_() | DefaultParamHandler | protected | 
  | error_name_ | DefaultParamHandler | protected | 
  | extendMassTrace_(MassTrace &trace, SignedSize spectrum_index, DoubleReal mz, bool increase_rt, Size meta_index_overall, DoubleReal min_rt=0.0, DoubleReal max_rt=0.0) const | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | inlineprotected | 
  | extendMassTraces_(const IsotopePattern &pattern, MassTraces &traces, Size meta_index_overall) const | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | inlineprotected | 
  | FeatureFinderAlgorithm() | FeatureFinderAlgorithm< PeakType, FeatureType > | inline | 
  | FeatureFinderAlgorithmPicked() | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | inline | 
  | FeatureFinderAlgorithmPicked(const FeatureFinderAlgorithmPicked &) | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | private | 
  | FeatureMapType typedef | FeatureFinderAlgorithmPicked< PeakType, FeatureType > |  | 
  | features_ | FeatureFinderAlgorithm< PeakType, FeatureType > | protected | 
  | ff_ | FeatureFinderAlgorithm< PeakType, FeatureType > | protected | 
  | findBestIsotopeFit_(const Seed ¢er, UInt charge, IsotopePattern &best_pattern) const | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | inlineprotected | 
  | findIsotope_(DoubleReal pos, Size spectrum_index, IsotopePattern &pattern, Size pattern_index, Size &peak_index) const | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | inlineprotected | 
  | Flag enum name | FeatureFinderDefs |  | 
  | FloatDataArrays typedef | FeatureFinderAlgorithmPicked< PeakType, FeatureType > |  | 
  | getDefaultParameters() const | FeatureFinderAlgorithm< PeakType, FeatureType > | inlinevirtual | 
  | getDefaults() const | DefaultParamHandler |  | 
  | getIsotopeDistribution_(DoubleReal mass) const | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | inlineprotected | 
  | getName() const | DefaultParamHandler |  | 
  | getParameters() const | DefaultParamHandler |  | 
  | getProductName() | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | inlinestatic | 
  | getSubsections() const | DefaultParamHandler |  | 
  | IndexPair typedef | FeatureFinderDefs |  | 
  | IndexSet typedef | FeatureFinderDefs |  | 
  | intensity_bins_ | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | intensity_mz_step_ | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | intensity_percentage_ | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | intensity_percentage_optional_ | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | intensity_rt_step_ | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | intensity_thresholds_ | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | intensityScore_(Size spectrum, Size peak) const | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | inlineprotected | 
  | intensityScore_(Size rt_bin, Size mz_bin, DoubleReal intensity) const | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | inlineprotected | 
  | IntensityType typedef | FeatureFinderAlgorithm< PeakType, FeatureType > |  | 
  | intersection_(const Feature &f1, const Feature &f2) const | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | inlineprotected | 
  | isotope_distributions_ | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | IsotopePattern typedef | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | isotopeScore_(const TheoreticalIsotopePattern &isotopes, IsotopePattern &pattern, bool consider_mz_distances) const | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | inlineprotected | 
  | log_ | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | mutableprotected | 
  | map_ | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | MapType typedef | FeatureFinderAlgorithmPicked< PeakType, FeatureType > |  | 
  | mass_window_width_ | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | MassTrace typedef | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | MassTraces typedef | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | max_feature_intersection_ | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | max_missing_trace_peaks_ | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | max_rt_span_ | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | min_isotope_fit_ | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | min_rt_span_ | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | min_spectra_ | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | min_trace_score_ | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | nearest_(DoubleReal pos, const SpectrumType &spec, Size start) const | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | inlineprotected | 
  | operator=(const FeatureFinderAlgorithmPicked &) | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | private | 
  | OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual | 
  | operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual | 
  | optional_fit_improvement_ | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | param_ | DefaultParamHandler | protected | 
  | pattern_tolerance_ | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | positionScore_(DoubleReal pos1, DoubleReal pos2, DoubleReal allowed_deviation) const | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | inlineprotected | 
  | registerChildren() | FeatureFinderAlgorithm< PeakType, FeatureType > | static | 
  | reported_mz_ | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | run() | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | inlinevirtual | 
  | Seed typedef | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | seeds_ | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | setData(const MapType &map, FeatureMapType &features, FeatureFinder &ff) | FeatureFinderAlgorithm< PeakType, FeatureType > | inline | 
  | setName(const String &name) | DefaultParamHandler |  | 
  | setParameters(const Param ¶m) | DefaultParamHandler |  | 
  | setSeeds(const FeatureMapType &seeds) | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | inlinevirtual | 
  | slope_bound_ | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | SpectrumType typedef | FeatureFinderAlgorithmPicked< PeakType, FeatureType > |  | 
  | subsections_ | DefaultParamHandler | protected | 
  | TheoreticalIsotopePattern typedef | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | trace_tolerance_ | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | protected | 
  | UNUSED enum value | FeatureFinderDefs |  | 
  | updateMembers_() | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | inlineprotectedvirtual | 
  | USED enum value | FeatureFinderDefs |  | 
  | warn_empty_defaults_ | DefaultParamHandler | protected | 
  | writeFeatureDebugInfo_(TraceFitter< PeakType > *fitter, const MassTraces &traces, const MassTraces &new_traces, bool feature_ok, const String error_msg, const DoubleReal final_score, const Int plot_nr, const PeakType &peak, const String path="debug/features/") | FeatureFinderAlgorithmPicked< PeakType, FeatureType > | inlineprotected | 
  | ~DefaultParamHandler() | DefaultParamHandler | virtual | 
  | ~FeatureFinderAlgorithm() | FeatureFinderAlgorithm< PeakType, FeatureType > | inlinevirtual |