Internally (only by GPUs) used data structure . It allows efficient data exchange between CPU and GPU and avoids unnecessary memory moves. The class is tailored on the isotope wavelet transform and is in general not applicable on similar - but different - situations. More...
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeWaveletTransform.h>
| Public Member Functions | |
| TransSpectrum () | |
| TransSpectrum (const MSSpectrum< PeakType > *reference) | |
| virtual | ~TransSpectrum () | 
| virtual void | destroy () | 
| DoubleReal | getRT () const | 
| DoubleReal | getMZ (const UInt i) const | 
| DoubleReal | getRefIntensity (const UInt i) const | 
| DoubleReal | getTransIntensity (const UInt i) const | 
| void | setTransIntensity (const UInt i, const DoubleReal intens) | 
| Size | size () const | 
| const MSSpectrum< PeakType > * | getRefSpectrum () | 
| const MSSpectrum< PeakType > * | getRefSpectrum () const | 
| MSSpectrum< PeakType > ::const_iterator | MZBegin (const DoubleReal mz) const | 
| MSSpectrum< PeakType > ::const_iterator | MZEnd (const DoubleReal mz) const | 
| MSSpectrum< PeakType > ::const_iterator | end () const | 
| MSSpectrum< PeakType > ::const_iterator | begin () const | 
| Protected Attributes | |
| const MSSpectrum< PeakType > * | reference_ | 
| std::vector< float > * | trans_intens_ | 
| Friends | |
| class | IsotopeWaveletTransform | 
Internally (only by GPUs) used data structure . It allows efficient data exchange between CPU and GPU and avoids unnecessary memory moves. The class is tailored on the isotope wavelet transform and is in general not applicable on similar - but different - situations.
| 
 | inline | 
Default constructor
| 
 | inline | 
Copy constructor
References IsotopeWaveletTransform< PeakType >::TransSpectrum::reference_, and IsotopeWaveletTransform< PeakType >::TransSpectrum::trans_intens_.
| 
 | inlinevirtual | 
Destructor
References IsotopeWaveletTransform< PeakType >::TransSpectrum::trans_intens_.
| 
 | inline | 
Attention: iterations will only performed over the reference spectrum. You will have to use the "distance"-function in order to get the corresponding entry of the transform.
References IsotopeWaveletTransform< PeakType >::TransSpectrum::reference_.
Referenced by IsotopeWaveletTransform< PeakType >::checkPositionForPlausibility_(), and IsotopeWaveletTransform< PeakType >::scoreThis_().
| 
 | inlinevirtual | 
References NULL, IsotopeWaveletTransform< PeakType >::TransSpectrum::reference_, and IsotopeWaveletTransform< PeakType >::TransSpectrum::trans_intens_.
Referenced by IsotopeWaveletParallelFor< PeakType, FeatureType >::operator()(), and FeatureFinderAlgorithmIsotopeWavelet< OpenMS::Peak2D, FeatureType >::run().
| 
 | inline | 
Attention: iterations will only performed over the reference spectrum. You will have to use the "distance"-function in order to get the corresponding entry of the transform.
References IsotopeWaveletTransform< PeakType >::TransSpectrum::reference_.
Referenced by IsotopeWaveletTransform< PeakType >::checkPositionForPlausibility_().
| 
 | inline | 
Returns the mass-over-charge ratio at index i. 
References IsotopeWaveletTransform< PeakType >::TransSpectrum::reference_.
Referenced by IsotopeWaveletParallelFor< PeakType, FeatureType >::operator()(), FeatureFinderAlgorithmIsotopeWavelet< OpenMS::Peak2D, FeatureType >::run(), and IsotopeWaveletTransform< PeakType >::scoreThis_().
| 
 | inline | 
Returns the reference (non-transformed) intensity at index i. 
References IsotopeWaveletTransform< PeakType >::TransSpectrum::reference_.
Referenced by IsotopeWaveletParallelFor< PeakType, FeatureType >::operator()(), and FeatureFinderAlgorithmIsotopeWavelet< OpenMS::Peak2D, FeatureType >::run().
| 
 | inline | 
Returns a pointer to the reference spectrum.
References IsotopeWaveletTransform< PeakType >::TransSpectrum::reference_.
| 
 | inline | 
Returns a pointer to the reference spectrum.
References IsotopeWaveletTransform< PeakType >::TransSpectrum::reference_.
| 
 | inline | 
Returns the RT value (not the index) of the associated scan.
References MSSpectrum< PeakT >::getRT(), and IsotopeWaveletTransform< PeakType >::TransSpectrum::reference_.
| 
 | inline | 
Returns the transformed intensity at index i. 
References IsotopeWaveletTransform< PeakType >::TransSpectrum::trans_intens_.
Referenced by IsotopeWaveletTransform< PeakType >::getAvIntens_(), IsotopeWaveletTransform< PeakType >::getSdIntens_(), IsotopeWaveletParallelFor< PeakType, FeatureType >::operator()(), FeatureFinderAlgorithmIsotopeWavelet< OpenMS::Peak2D, FeatureType >::run(), and IsotopeWaveletTransform< PeakType >::scoreThis_().
| 
 | inline | 
Attention: iterations will only performed over the reference spectrum. You will have to use the "distance"-function in order to get the corresponding entry of the transform.
References MSSpectrum< PeakT >::MZBegin(), and IsotopeWaveletTransform< PeakType >::TransSpectrum::reference_.
Referenced by IsotopeWaveletTransform< PeakType >::checkPositionForPlausibility_(), and IsotopeWaveletTransform< PeakType >::scoreThis_().
| 
 | inline | 
Attention: iterations will only performed over the reference spectrum. You will have to use the "distance"-function in order to get the corresponding entry of the transform.
References MSSpectrum< PeakT >::MZEnd(), and IsotopeWaveletTransform< PeakType >::TransSpectrum::reference_.
| 
 | inline | 
Stores the intensity value i of the transform at position i. 
| 
 | inline | 
Returns the size of spectra.
References IsotopeWaveletTransform< PeakType >::TransSpectrum::trans_intens_.
Referenced by IsotopeWaveletTransform< PeakType >::getAvIntens_(), IsotopeWaveletTransform< PeakType >::getSdIntens_(), IsotopeWaveletParallelFor< PeakType, FeatureType >::operator()(), FeatureFinderAlgorithmIsotopeWavelet< OpenMS::Peak2D, FeatureType >::run(), and IsotopeWaveletTransform< PeakType >::scoreThis_().
| 
 | friend | 
| 
 | protected | 
Referenced by IsotopeWaveletTransform< PeakType >::TransSpectrum::begin(), IsotopeWaveletTransform< PeakType >::TransSpectrum::destroy(), IsotopeWaveletTransform< PeakType >::TransSpectrum::end(), IsotopeWaveletTransform< PeakType >::TransSpectrum::getMZ(), IsotopeWaveletTransform< PeakType >::TransSpectrum::getRefIntensity(), IsotopeWaveletTransform< PeakType >::TransSpectrum::getRefSpectrum(), IsotopeWaveletTransform< PeakType >::TransSpectrum::getRT(), IsotopeWaveletTransform< PeakType >::TransSpectrum::MZBegin(), IsotopeWaveletTransform< PeakType >::TransSpectrum::MZEnd(), and IsotopeWaveletTransform< PeakType >::TransSpectrum::TransSpectrum().
| 
 | protected | 
Referenced by IsotopeWaveletTransform< PeakType >::TransSpectrum::destroy(), IsotopeWaveletTransform< PeakType >::TransSpectrum::getTransIntensity(), IsotopeWaveletTransform< PeakType >::TransSpectrum::size(), IsotopeWaveletTransform< PeakType >::TransSpectrum::TransSpectrum(), and IsotopeWaveletTransform< PeakType >::TransSpectrum::~TransSpectrum().
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:34 using doxygen 1.8.5 |