| aa_to_index_ | SvmTheoreticalSpectrumGenerator | protectedstatic | 
  | basicity_ | SvmTheoreticalSpectrumGenerator | protectedstatic | 
  | check_defaults_ | DefaultParamHandler | protected | 
  | DefaultParamHandler(const String &name) | DefaultParamHandler |  | 
  | DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |  | 
  | defaults_ | DefaultParamHandler | protected | 
  | defaultsToParam_() | DefaultParamHandler | protected | 
  | error_name_ | DefaultParamHandler | protected | 
  | generateDescriptorSet_(AASequence peptide, Size position, IonType type, Size precursor_charge, DescriptorSet &desc_set) | SvmTheoreticalSpectrumGenerator | protected | 
  | getDefaults() const | DefaultParamHandler |  | 
  | getIonTypes() | SvmTheoreticalSpectrumGenerator | inline | 
  | getName() const | DefaultParamHandler |  | 
  | getParameters() const | DefaultParamHandler |  | 
  | getSubsections() const | DefaultParamHandler |  | 
  | helicity_ | SvmTheoreticalSpectrumGenerator | protectedstatic | 
  | hide_type_ | SvmTheoreticalSpectrumGenerator | protected | 
  | hydrophobicity_ | SvmTheoreticalSpectrumGenerator | protectedstatic | 
  | initializedMaps_ | SvmTheoreticalSpectrumGenerator | protectedstatic | 
  | initializeMaps_() | SvmTheoreticalSpectrumGenerator | protectedstatic | 
  | IntensityMap typedef | SvmTheoreticalSpectrumGenerator | protected | 
  | load() | SvmTheoreticalSpectrumGenerator |  | 
  | mp_ | SvmTheoreticalSpectrumGenerator | protected | 
  | operator=(const SvmTheoreticalSpectrumGenerator &tsg) | SvmTheoreticalSpectrumGenerator |  | 
  | OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual | 
  | operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual | 
  | param_ | DefaultParamHandler | protected | 
  | precursor_charge_ | SvmTheoreticalSpectrumGenerator | protected | 
  | ResidueTypeToString_(Residue::ResidueType type) | SvmTheoreticalSpectrumGenerator | protected | 
  | scaleDescriptorSet_(DescriptorSet &desc, double lower, double upper) | SvmTheoreticalSpectrumGenerator | protected | 
  | scaleSingleFeature_(double &value, double feature_min, double feature_max, double lower=-1.0, double upper=1.0) | SvmTheoreticalSpectrumGenerator | inlineprotected | 
  | setName(const String &name) | DefaultParamHandler |  | 
  | setParameters(const Param ¶m) | DefaultParamHandler |  | 
  | simulate(RichPeakSpectrum &spectrum, const AASequence &peptide, const gsl_rng *rng, Size precursor_charge) | SvmTheoreticalSpectrumGenerator |  | 
  | subsections_ | DefaultParamHandler | protected | 
  | SvmTheoreticalSpectrumGenerator() | SvmTheoreticalSpectrumGenerator |  | 
  | SvmTheoreticalSpectrumGenerator(const SvmTheoreticalSpectrumGenerator &source) | SvmTheoreticalSpectrumGenerator |  | 
  | SvmTheoreticalSpectrumGeneratorTrainer class | SvmTheoreticalSpectrumGenerator | friend | 
  | updateMembers_() | SvmTheoreticalSpectrumGenerator | protectedvirtual | 
  | warn_empty_defaults_ | DefaultParamHandler | protected | 
  | ~DefaultParamHandler() | DefaultParamHandler | virtual | 
  | ~SvmTheoreticalSpectrumGenerator() | SvmTheoreticalSpectrumGenerator | virtual |