| cmpOligos_(std::pair< Int, DoubleReal > a, std::pair< Int, DoubleReal > b) | LibSVMEncoder | privatestatic | 
  | destroyProblem(svm_problem *problem) | LibSVMEncoder | static | 
  | encodeCompositionVector(const String &sequence, std::vector< std::pair< Int, DoubleReal > > &encoded_vector, const String &allowed_characters="ACDEFGHIKLMNPQRSTVWY") | LibSVMEncoder |  | 
  | encodeCompositionVectors(const std::vector< String > &sequences, const String &allowed_characters, std::vector< std::vector< std::pair< Int, DoubleReal > > > &composition_vectors) | LibSVMEncoder |  | 
  | encodeLibSVMProblem(const std::vector< svm_node * > &vectors, std::vector< DoubleReal > &labels) | LibSVMEncoder |  | 
  | encodeLibSVMProblemWithCompositionAndLengthVectors(const std::vector< String > &sequences, std::vector< DoubleReal > &labels, const String &allowed_characters, UInt maximum_sequence_length) | LibSVMEncoder |  | 
  | encodeLibSVMProblemWithCompositionLengthAndWeightVectors(const std::vector< String > &sequences, std::vector< DoubleReal > &labels, const String &allowed_characters) | LibSVMEncoder |  | 
  | encodeLibSVMProblemWithCompositionVectors(const std::vector< String > &sequences, std::vector< DoubleReal > &labels, const String &allowed_characters) | LibSVMEncoder |  | 
  | encodeLibSVMProblemWithOligoBorderVectors(const std::vector< String > &sequences, std::vector< DoubleReal > &labels, UInt k_mer_length, const String &allowed_characters, UInt border_length, bool strict=false, bool unpaired=false, bool length_encoding=false) | LibSVMEncoder |  | 
  | encodeLibSVMVector(const std::vector< std::pair< Int, DoubleReal > > &feature_vector) | LibSVMEncoder |  | 
  | encodeLibSVMVectors(const std::vector< std::vector< std::pair< Int, DoubleReal > > > &feature_vectors, std::vector< svm_node * > &libsvm_vectors) | LibSVMEncoder |  | 
  | encodeOligo(const AASequence &sequence, UInt k_mer_length, const String &allowed_characters, std::vector< std::pair< Int, DoubleReal > > &values, bool is_right_border=false) | LibSVMEncoder |  | 
  | encodeOligoBorders(String sequence, UInt k_mer_length, const String &allowed_characters, UInt border_length, std::vector< std::pair< Int, DoubleReal > > &libsvm_vector, bool strict=false, bool unpaired=false, bool length_encoding=false) | LibSVMEncoder |  | 
  | encodeProblemWithOligoBorderVectors(const std::vector< AASequence > &sequences, UInt k_mer_length, const String &allowed_characters, UInt border_length, std::vector< std::vector< std::pair< Int, DoubleReal > > > &vectors) | LibSVMEncoder |  | 
  | LibSVMEncoder() | LibSVMEncoder |  | 
  | libSVMVectorsToString(svm_problem *vector, String &output) | LibSVMEncoder |  | 
  | libSVMVectorToString(svm_node *vector, String &output) | LibSVMEncoder |  | 
  | loadLibSVMProblem(const String &filename) | LibSVMEncoder |  | 
  | storeLibSVMProblem(const String &filename, const svm_problem *problem) const | LibSVMEncoder |  | 
  | ~LibSVMEncoder() | LibSVMEncoder |  |