| addModificationToPeptideHit_(Feature &feature, const String &modification, const Size &pos) const | ITRAQLabeler | protected | 
  | BaseLabeler() | BaseLabeler |  | 
  | channel_description_ | BaseLabeler | protected | 
  | channel_map_ | ITRAQLabeler | protected | 
  | ChannelInfo typedef | ITRAQLabeler |  | 
  | ChannelMapType typedef | ITRAQLabeler |  | 
  | check_defaults_ | DefaultParamHandler | protected | 
  | consensus_ | BaseLabeler | protected | 
  | create() | ITRAQLabeler | inlinestatic | 
  | DefaultParamHandler(const String &name) | DefaultParamHandler |  | 
  | DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |  | 
  | defaults_ | DefaultParamHandler | protected | 
  | defaultsToParam_() | DefaultParamHandler | protected | 
  | error_name_ | DefaultParamHandler | protected | 
  | getChannelIntensityName(const Size channel_index) const | BaseLabeler |  | 
  | getConsensus() | BaseLabeler |  | 
  | getDefaultParameters() const | BaseLabeler | virtual | 
  | getDefaults() const | DefaultParamHandler |  | 
  | getDescription() const | BaseLabeler |  | 
  | getItraqIntensity_(const Feature &f, const DoubleReal MS2_RT_time) const | ITRAQLabeler | protected | 
  | getName() const | DefaultParamHandler |  | 
  | getParameters() const | DefaultParamHandler |  | 
  | getProductName() | ITRAQLabeler | inlinestatic | 
  | getRTProfileIntensity_(const Feature &f, const DoubleReal MS2_RT_time) const | ITRAQLabeler | protected | 
  | getSubsections() const | DefaultParamHandler |  | 
  | isotope_corrections_ | ITRAQLabeler | protected | 
  | IsotopeMatrices typedef | ITRAQLabeler |  | 
  | itraq_type_ | ITRAQLabeler | protected | 
  | ITRAQLabeler() | ITRAQLabeler |  | 
  | labelPeptide_(const Feature &feature, FeatureMapSim &result) const | ITRAQLabeler | protected | 
  | mergeFeatures_(Feature &labeled_channel_feature, const AASequence &unmodified_sequence, std::map< AASequence, Feature > &unlabeled_features_index) const | ITRAQLabeler | protected | 
  | mergeProteinAccessions_(Feature &target, const Feature &source) const | BaseLabeler | protected | 
  | mergeProteinIdentificationsMaps_(const FeatureMapSimVector &maps) | BaseLabeler | protected | 
  | operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual | 
  | operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual | 
  | param_ | DefaultParamHandler | protected | 
  | postDetectabilityHook(FeatureMapSimVector &) | ITRAQLabeler | virtual | 
  | postDigestHook(FeatureMapSimVector &) | ITRAQLabeler | virtual | 
  | postIonizationHook(FeatureMapSimVector &) | ITRAQLabeler | virtual | 
  | postRawMSHook(FeatureMapSimVector &) | ITRAQLabeler | virtual | 
  | postRawTandemMSHook(FeatureMapSimVector &, MSSimExperiment &) | ITRAQLabeler | virtual | 
  | postRTHook(FeatureMapSimVector &) | ITRAQLabeler | virtual | 
  | preCheck(Param ¶m) const | ITRAQLabeler | virtual | 
  | recomputeConsensus_(const FeatureMapSim &simulated_features) | BaseLabeler | protected | 
  | registerChildren() | BaseLabeler | static | 
  | rng_ | BaseLabeler | protected | 
  | setName(const String &name) | DefaultParamHandler |  | 
  | setParameters(const Param ¶m) | DefaultParamHandler |  | 
  | setRnd(const SimRandomNumberGenerator &rng) | BaseLabeler | virtual | 
  | setUpHook(FeatureMapSimVector &) | ITRAQLabeler | virtual | 
  | subsections_ | DefaultParamHandler | protected | 
  | updateMembers_() | ITRAQLabeler | protectedvirtual | 
  | warn_empty_defaults_ | DefaultParamHandler | protected | 
  | y_labeling_efficiency_ | ITRAQLabeler | protected | 
  | ~BaseLabeler() | BaseLabeler | virtual | 
  | ~DefaultParamHandler() | DefaultParamHandler | virtual | 
  | ~ITRAQLabeler() | ITRAQLabeler | virtual |