This is the complete list of members for PILISNeutralLossModel, including all inherited members.
  | check_defaults_ | DefaultParamHandler | protected | 
  | DefaultParamHandler(const String &name) | DefaultParamHandler |  | 
  | DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |  | 
  | defaults_ | DefaultParamHandler | protected | 
  | defaultsToParam_() | DefaultParamHandler | protected | 
  | enableIonStates_(const AASequence &peptide) | PILISNeutralLossModel | protected | 
  | error_name_ | DefaultParamHandler | protected | 
  | evaluate() | PILISNeutralLossModel |  | 
  | generateModel() | PILISNeutralLossModel |  | 
  | getDefaults() const | DefaultParamHandler |  | 
  | getHMM() const | PILISNeutralLossModel |  | 
  | getIntensitiesFromSpectrum_(const RichPeakSpectrum &train_spec, Map< String, DoubleReal > &pre_ints, DoubleReal ion_weight, const AASequence &peptide, UInt charge) | PILISNeutralLossModel | protected | 
  | getIons(std::vector< RichPeak1D > &peaks, const AASequence &peptide, DoubleReal initial_prob) | PILISNeutralLossModel |  | 
  | getIons_(Map< String, DoubleReal > &intensities, DoubleReal initial_probability, const AASequence &precursor) | PILISNeutralLossModel | protected | 
  | getName() const | DefaultParamHandler |  | 
  | getParameters() const | DefaultParamHandler |  | 
  | getSubsections() const | DefaultParamHandler |  | 
  | hmm_precursor_ | PILISNeutralLossModel | protected | 
  | num_explicit_ | PILISNeutralLossModel | protected | 
  | operator=(const PILISNeutralLossModel &mode) | PILISNeutralLossModel |  | 
  | OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual | 
  | operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual | 
  | param_ | DefaultParamHandler | protected | 
  | PILISNeutralLossModel() | PILISNeutralLossModel |  | 
  | PILISNeutralLossModel(const PILISNeutralLossModel &model) | PILISNeutralLossModel |  | 
  | PILISNeutralLossModelGenerator class | PILISNeutralLossModel | friend | 
  | setHMM(const HiddenMarkovModel &model) | PILISNeutralLossModel |  | 
  | setName(const String &name) | DefaultParamHandler |  | 
  | setParameters(const Param ¶m) | DefaultParamHandler |  | 
  | subsections_ | DefaultParamHandler | protected | 
  | train(const RichPeakSpectrum &spec, const AASequence &peptide, DoubleReal ion_weight, UInt charge, DoubleReal peptide_weight) | PILISNeutralLossModel |  | 
  | trainIons_(DoubleReal initial_probability, const Map< String, DoubleReal > &intensities, const AASequence &peptide) | PILISNeutralLossModel | protected | 
  | updateMembers_() | PILISNeutralLossModel | protectedvirtual | 
  | warn_empty_defaults_ | DefaultParamHandler | protected | 
  | ~DefaultParamHandler() | DefaultParamHandler | virtual | 
  | ~PILISNeutralLossModel() | PILISNeutralLossModel | virtual |