Filters MS2 spectra based on XIC intensities in control and treatment. Used in RNPxl experiments to reduce candidate spectra.
| potential predecessor tools |  RNPxlXICFilter   | potential successor tools | 
| TOPP_PeakPickerHires | RNPxl | 
The command line parameters of this tool are:
RNPxlXICFilter -- Remove MS2 spectra from treatment based on the fold change between control and treatment.
Version: 1.11.1 Nov 14 2013, 11:18:15, Revision: 11976
Usage:
  RNPxlXICFilter <options>
Options (mandatory options marked with '*'):
  -control <file>*    Input mzML file (valid formats: 'mzML')
  -treatment <file>*  Input mzML file (valid formats: 'mzML')
  -fold_change        Fold change between XICs (default: '2')
  -rt_tol             RT tolerance in [s] for finding max peak (whole RT range around RT middle) (default: 
                      '20')
  -mz_tol             M/z tolerance in [ppm] for finding a peak (default: '10')
  -out <file>*        Output of the treatment file after XIC filtering. (valid formats: 'mzML')
                      
Common UTIL options:
  -ini <file>         Use the given TOPP INI file
  -threads <n>        Sets the number of threads allowed to be used by the TOPP tool (default: '1')
  -write_ini <file>   Writes the default configuration file
  --help              Shows options
  --helphelp          Shows all options (including advanced)
INI file documentation of this tool:
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:24 using doxygen 1.8.5 |