| av_MZ_spacing_ | IsotopeWaveletTransform< PeakType > | protected | 
  | Box typedef | IsotopeWaveletTransform< PeakType > |  | 
  | c_mzs_ | IsotopeWaveletTransform< PeakType > | protected | 
  | c_sorted_candidate_ | IsotopeWaveletTransform< PeakType > | protected | 
  | c_spacings_ | IsotopeWaveletTransform< PeakType > | protected | 
  | checkPositionForPlausibility_(const TransSpectrum &candidate, const MSSpectrum< PeakType > &ref, const DoubleReal seed_mz, const UInt c, const UInt scan_index, const bool check_PPMs, const DoubleReal transintens, const DoubleReal prev_score) | IsotopeWaveletTransform< PeakType > | protectedvirtual | 
  | checkPositionForPlausibility_(const MSSpectrum< PeakType > &candidate, const MSSpectrum< PeakType > &ref, const DoubleReal seed_mz, const UInt c, const UInt scan_index, const bool check_PPMs, const DoubleReal transintens, const DoubleReal prev_score) | IsotopeWaveletTransform< PeakType > | protectedvirtual | 
  | checkPPMTheoModel_(const MSSpectrum< PeakType > &ref, const DoubleReal c_mz, const UInt c) | IsotopeWaveletTransform< PeakType > | protectedvirtual | 
  | closed_boxes_ | IsotopeWaveletTransform< PeakType > | protected | 
  | clusterSeeds_(const TransSpectrum &candidates, const MSSpectrum< PeakType > &ref, const UInt scan_index, const UInt c, const bool check_PPMs) | IsotopeWaveletTransform< PeakType > | protected | 
  | clusterSeeds_(const MSSpectrum< PeakType > &candidates, const MSSpectrum< PeakType > &ref, const UInt scan_index, const UInt c, const bool check_PPMs) | IsotopeWaveletTransform< PeakType > | protectedvirtual | 
  | computeMinSpacing(const MSSpectrum< PeakType > &c_ref) | IsotopeWaveletTransform< PeakType > | virtual | 
  | data_length_ | IsotopeWaveletTransform< PeakType > | protected | 
  | end_boxes_ | IsotopeWaveletTransform< PeakType > | protected | 
  | extendBox_(const MSExperiment< PeakType > &map, const Box box) | IsotopeWaveletTransform< PeakType > | protected | 
  | from_max_to_left_ | IsotopeWaveletTransform< PeakType > | protected | 
  | from_max_to_right_ | IsotopeWaveletTransform< PeakType > | protected | 
  | front_boxes_ | IsotopeWaveletTransform< PeakType > | protected | 
  | getAvIntens_(const TransSpectrum &scan) | IsotopeWaveletTransform< PeakType > | inlineprotected | 
  | getAvIntens_(const MSSpectrum< PeakType > &scan) | IsotopeWaveletTransform< PeakType > | inlineprotected | 
  | getAvMZSpacing_(const MSSpectrum< PeakType > &scan) | IsotopeWaveletTransform< PeakType > | inlineprotected | 
  | getClosedBoxes() | IsotopeWaveletTransform< PeakType > | inlinevirtual | 
  | getLinearInterpolation(const typename MSSpectrum< PeakType >::const_iterator &left_iter, const DoubleReal mz_pos, const typename MSSpectrum< PeakType >::const_iterator &right_iter) | IsotopeWaveletTransform< PeakType > | inline | 
  | getLinearInterpolation(const DoubleReal mz_a, const DoubleReal intens_a, const DoubleReal mz_pos, const DoubleReal mz_b, const DoubleReal intens_b) | IsotopeWaveletTransform< PeakType > | inline | 
  | getMaxScanSize() const | IsotopeWaveletTransform< PeakType > | inline | 
  | getMinSpacing() const | IsotopeWaveletTransform< PeakType > | inline | 
  | getPPMs_(const DoubleReal mass_a, const DoubleReal mass_b) const | IsotopeWaveletTransform< PeakType > | inlineprotected | 
  | getSdIntens_(const TransSpectrum &scan, const DoubleReal mean) | IsotopeWaveletTransform< PeakType > | inlineprotected | 
  | getSdIntens_(const MSSpectrum< PeakType > &scan, const DoubleReal mean) | IsotopeWaveletTransform< PeakType > | inlineprotected | 
  | getSigma() const | IsotopeWaveletTransform< PeakType > | inline | 
  | getTransform(MSSpectrum< PeakType > &c_trans, const MSSpectrum< PeakType > &c_ref, const UInt c) | IsotopeWaveletTransform< PeakType > | virtual | 
  | getTransformHighRes(MSSpectrum< PeakType > &c_trans, const MSSpectrum< PeakType > &c_ref, const UInt c) | IsotopeWaveletTransform< PeakType > | virtual | 
  | hr_data_ | IsotopeWaveletTransform< PeakType > | protected | 
  | identifyCharge(const MSSpectrum< PeakType > &candidates, const MSSpectrum< PeakType > &ref, const UInt scan_index, const UInt c, const DoubleReal ampl_cutoff, const bool check_PPMs) | IsotopeWaveletTransform< PeakType > | virtual | 
  | indices_ | IsotopeWaveletTransform< PeakType > | protected | 
  | initializeScan(const MSSpectrum< PeakType > &c_ref, const UInt c=0) | IsotopeWaveletTransform< PeakType > | virtual | 
  | intenstype_ | IsotopeWaveletTransform< PeakType > | protected | 
  | interpol_xs_ | IsotopeWaveletTransform< PeakType > | protected | 
  | interpol_ys_ | IsotopeWaveletTransform< PeakType > | protected | 
  | IsotopeWaveletTransform(const DoubleReal min_mz, const DoubleReal max_mz, const UInt max_charge, const Size max_scan_size=0, const bool use_cuda=false, const bool hr_data=false, const String intenstype="ref") | IsotopeWaveletTransform< PeakType > |  | 
  | IsotopeWaveletTransform() | IsotopeWaveletTransform< PeakType > | protected | 
  | mapSeeds2Features(const MSExperiment< PeakType > &map, const UInt RT_votes_cutoff) | IsotopeWaveletTransform< PeakType > |  | 
  | max_charge_ | IsotopeWaveletTransform< PeakType > | protected | 
  | max_mz_cutoff_ | IsotopeWaveletTransform< PeakType > | protected | 
  | max_num_peaks_per_pattern_ | IsotopeWaveletTransform< PeakType > | protected | 
  | max_scan_size_ | IsotopeWaveletTransform< PeakType > | protected | 
  | mergeFeatures(IsotopeWaveletTransform< PeakType > *later_iwt, const UInt RT_interleave, const UInt RT_votes_cutoff) | IsotopeWaveletTransform< PeakType > |  | 
  | min_spacing_ | IsotopeWaveletTransform< PeakType > | protected | 
  | open_boxes_ | IsotopeWaveletTransform< PeakType > | protected | 
  | peptideMassRule_(const DoubleReal c_mass) const | IsotopeWaveletTransform< PeakType > | inlineprotected | 
  | prod_ | IsotopeWaveletTransform< PeakType > | protected | 
  | psi_ | IsotopeWaveletTransform< PeakType > | protected | 
  | push2Box_(const DoubleReal mz, const UInt scan, UInt c, const DoubleReal score, const DoubleReal intens, const DoubleReal rt, const UInt MZ_begin, const UInt MZ_end, const DoubleReal ref_intens) | IsotopeWaveletTransform< PeakType > | protectedvirtual | 
  | push2TmpBox_(const DoubleReal mz, const UInt scan, UInt charge, const DoubleReal score, const DoubleReal intens, const DoubleReal rt, const UInt MZ_begin, const UInt MZ_end) | IsotopeWaveletTransform< PeakType > | protectedvirtual | 
  | sampleTheCMarrWavelet_(const MSSpectrum< PeakType > &scan, const Int wavelet_length, const Int mz_index, const UInt charge) | IsotopeWaveletTransform< PeakType > | inlineprotected | 
  | scores_ | IsotopeWaveletTransform< PeakType > | protected | 
  | scoreThis_(const TransSpectrum &candidate, const UInt peak_cutoff, const DoubleReal seed_mz, const UInt c, const DoubleReal ampl_cutoff) | IsotopeWaveletTransform< PeakType > | protectedvirtual | 
  | scoreThis_(const MSSpectrum< PeakType > &candidate, const UInt peak_cutoff, const DoubleReal seed_mz, const UInt c, const DoubleReal ampl_cutoff) | IsotopeWaveletTransform< PeakType > | protectedvirtual | 
  | setSigma(const DoubleReal sigma) | IsotopeWaveletTransform< PeakType > | inline | 
  | sigma_ | IsotopeWaveletTransform< PeakType > | protected | 
  | tmp_boxes_ | IsotopeWaveletTransform< PeakType > | protected | 
  | updateBoxStates(const MSExperiment< PeakType > &map, const Size scan_index, const UInt RT_interleave, const UInt RT_votes_cutoff, const Int front_bound=-1, const Int end_bound=-1) | IsotopeWaveletTransform< PeakType > |  | 
  | xs_ | IsotopeWaveletTransform< PeakType > | protected | 
  | zeros_ | IsotopeWaveletTransform< PeakType > | protected | 
  | ~IsotopeWaveletTransform() | IsotopeWaveletTransform< PeakType > | virtual |