| check_defaults_ | DefaultParamHandler | protected | 
  | curr_region_ | TwoDOptimization | protected | 
  | DefaultParamHandler(const String &name) | DefaultParamHandler |  | 
  | DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |  | 
  | defaults_ | DefaultParamHandler | protected | 
  | defaultsToParam_() | DefaultParamHandler | protected | 
  | eps_abs_ | TwoDOptimization | protected | 
  | eps_rel_ | TwoDOptimization | protected | 
  | error_name_ | DefaultParamHandler | protected | 
  | evaluate2D_(const gsl_vector *x, void *params, gsl_vector *f, gsl_matrix *J) | TwoDOptimization | protectedstatic | 
  | findMatchingPeaks_(std::multimap< DoubleReal, IsotopeCluster >::iterator &it, MSExperiment<> &ms_exp) | TwoDOptimization | protected | 
  | getDefaults() const | DefaultParamHandler |  | 
  | getMaxAbsError() const | TwoDOptimization | inline | 
  | getMaxIterations() const | TwoDOptimization | inline | 
  | getMaxPeakDistance() const | TwoDOptimization | inline | 
  | getMaxRelError() const | TwoDOptimization | inline | 
  | getMZTolerance() const | TwoDOptimization | inline | 
  | getName() const | DefaultParamHandler |  | 
  | getParameters() const | DefaultParamHandler |  | 
  | getPenalties() const | TwoDOptimization | inline | 
  | getRegionEndpoints_(MSExperiment< OutputPeakType > &exp, InputSpectrumIterator &first, InputSpectrumIterator &last, Size iso_map_idx, DoubleReal noise_level, TwoDOptimization::Data &d) | TwoDOptimization | protected | 
  | getSubsections() const | DefaultParamHandler |  | 
  | iso_map_ | TwoDOptimization | protected | 
  | jacobian2D_(const gsl_vector *x, void *params, gsl_matrix *J) | TwoDOptimization | protectedstatic | 
  | matching_peaks_ | TwoDOptimization | protected | 
  | max_iteration_ | TwoDOptimization | protected | 
  | max_peak_distance_ | TwoDOptimization | protected | 
  | operator=(const TwoDOptimization &opt) | TwoDOptimization |  | 
  | OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual | 
  | operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual | 
  | optimize(InputSpectrumIterator first, InputSpectrumIterator last, MSExperiment< OutputPeakType > &ms_exp, bool real2D=true) | TwoDOptimization |  | 
  | optimizeRegions_(InputSpectrumIterator &first, InputSpectrumIterator &last, MSExperiment< OutputPeakType > &ms_exp) | TwoDOptimization | protected | 
  | optimizeRegionsScanwise_(InputSpectrumIterator &first, InputSpectrumIterator &last, MSExperiment< OutputPeakType > &ms_exp) | TwoDOptimization | protected | 
  | param_ | DefaultParamHandler | protected | 
  | penalties_ | TwoDOptimization | protected | 
  | real_2D_ | TwoDOptimization | protected | 
  | residual2D_(const gsl_vector *x, void *params, gsl_vector *f) | TwoDOptimization | protectedstatic | 
  | searchInScan_(std::vector< DoubleReal >::iterator scan_begin, std::vector< DoubleReal >::iterator scan_end, DoubleReal current_mz) | TwoDOptimization | protected | 
  | setMaxAbsError(DoubleReal eps_abs) | TwoDOptimization | inline | 
  | setMaxIterations(UInt max_iteration) | TwoDOptimization | inline | 
  | setMaxPeakDistance(DoubleReal max_peak_distance) | TwoDOptimization | inline | 
  | setMaxRelError(DoubleReal eps_rel) | TwoDOptimization | inline | 
  | setMZTolerance(DoubleReal tolerance_mz) | TwoDOptimization | inline | 
  | setName(const String &name) | DefaultParamHandler |  | 
  | setParameters(const Param ¶m) | DefaultParamHandler |  | 
  | setPenalties(OptimizationFunctions::PenaltyFactorsIntensity &penalties) | TwoDOptimization | inline | 
  | subsections_ | DefaultParamHandler | protected | 
  | tolerance_mz_ | TwoDOptimization | protected | 
  | TwoDOptimization() | TwoDOptimization |  | 
  | TwoDOptimization(const TwoDOptimization &opt) | TwoDOptimization |  | 
  | updateMembers_() | TwoDOptimization | protectedvirtual | 
  | warn_empty_defaults_ | DefaultParamHandler | protected | 
  | ~DefaultParamHandler() | DefaultParamHandler | virtual | 
  | ~TwoDOptimization() | TwoDOptimization | inlinevirtual |