This is the complete list of members for ConfidenceScoring, including all inherited members.
  | begin_ | ProgressLogger | mutableprotected | 
  | BimapType typedef | ConfidenceScoring | protected | 
  | chooseDecoys_() | ConfidenceScoring | protected | 
  | CMD enum value | ProgressLogger |  | 
  | ConfidenceScoring(bool test_mode_=false) | ConfidenceScoring | inline | 
  | decoy_index_ | ConfidenceScoring | protected | 
  | dlg_ | ProgressLogger | mutableprotected | 
  | end_ | ProgressLogger | mutableprotected | 
  | endProgress() const | ProgressLogger |  | 
  | extractIntensities_(BimapType &intensity_map, Size n_transitions, DoubleList &intensities) | ConfidenceScoring | protected | 
  | generator_ | ConfidenceScoring | protected | 
  | getAssayRT_(const TargetedExperiment::Peptide &assay, const String &cv_accession="MS:1000896") | ConfidenceScoring | protected | 
  | getLogType() const | ProgressLogger |  | 
  | glm_ | ConfidenceScoring | protected | 
  | GUI enum value | ProgressLogger |  | 
  | initialize(TargetedExperiment library, Size n_decoys, Size n_transitions, TransformationDescription rt_trafo) | ConfidenceScoring | inline | 
  | initializeGlm(double intercept, double rt_coef, double int_coef) | ConfidenceScoring | inline | 
  | int_coef | ConfidenceScoring |  | 
  | intercept | ConfidenceScoring |  | 
  | last_invoke_ | ProgressLogger | mutableprotected | 
  | library_ | ConfidenceScoring | protected | 
  | LogType enum name | ProgressLogger |  | 
  | manhattanDist_(DoubleList x, DoubleList y) | ConfidenceScoring | protected | 
  | max_rt | ConfidenceScoring |  | 
  | min_rt | ConfidenceScoring |  | 
  | n_decoys_ | ConfidenceScoring | protected | 
  | n_transitions_ | ConfidenceScoring | protected | 
  | NONE enum value | ProgressLogger |  | 
  | ProgressLogger() | ProgressLogger |  | 
  | rand_gen_ | ConfidenceScoring | protected | 
  | recursion_depth_ | ProgressLogger | protectedstatic | 
  | rt_coef | ConfidenceScoring |  | 
  | rt_norm_ | ConfidenceScoring | protected | 
  | rt_trafo_ | ConfidenceScoring | protected | 
  | scoreAssay_(const TargetedExperiment::Peptide &assay, DoubleReal feature_rt, DoubleList &feature_intensities, const std::set< String > &transition_ids=std::set< String >()) | ConfidenceScoring | protected | 
  | scoreFeature_(Feature &feature) | ConfidenceScoring | protected | 
  | scoreMap(FeatureMap<> &features) | ConfidenceScoring | inline | 
  | setLogType(LogType type) const | ProgressLogger |  | 
  | setProgress(SignedSize value) const | ProgressLogger |  | 
  | startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger |  | 
  | stop_watch_ | ProgressLogger | mutableprotected | 
  | transition_map_ | ConfidenceScoring | protected | 
  | type_ | ProgressLogger | mutableprotected | 
  | value_ | ProgressLogger | mutableprotected | 
  | ~ProgressLogger() | ProgressLogger |  |