35 #ifndef OPENMS_FORMAT_HANDLERS_MZQUANTMLHANDLER_H 
   36 #define OPENMS_FORMAT_HANDLERS_MZQUANTMLHANDLER_H 
   73       virtual void endElement(
const XMLCh * 
const , 
const XMLCh * 
const , 
const XMLCh * 
const qname);
 
   76       virtual void startElement(
const XMLCh * 
const , 
const XMLCh * 
const , 
const XMLCh * 
const qname, 
const xercesc::Attributes & attributes);
 
   79       virtual void characters(
const XMLCh * 
const chars, 
const XMLSize_t length);
 
   82       virtual void writeTo(std::ostream & os);
 
   99       void handleCVParam_(
const String & parent_parent_tag, 
const String & parent_tag, 
const String & accession, 
const String & name, 
const String & value, 
const xercesc::Attributes & attributes, 
const String & cv_ref, 
const String & unit_accession = 
"");
 
  102       void handleUserParam_(
const String & parent_parent_tag, 
const String & parent_tag, 
const String & name, 
const String & type, 
const String & value);
 
  118       void writeFeature_(std::ostream & os, 
const String & identifier_prefix, 
UInt64 identifier, 
UInt indentation_level);
 
  142       std::map<String, ConsensusFeature::Ratio> 
r_rtemp_;
 
  144       std::map<String, ConsensusFeature::Ratio> 
r_r_obj_;
 
String current_id_
Definition: MzQuantMLHandler.h:130
Representation of a CV term. 
Definition: ControlledVocabulary.h:60
A more convenient string class. 
Definition: String.h:56
std::set< DataProcessing::ProcessingAction > current_pas_
Definition: MzQuantMLHandler.h:150
const ProgressLogger & logger_
Progress logger. 
Definition: MzQuantMLHandler.h:87
std::map< String, ConsensusFeature > cf_cf_obj_
Definition: MzQuantMLHandler.h:140
std::vector< CVTerm > cvp_stack_
Definition: MzQuantMLHandler.h:135
Definition: MSQuantifications.h:127
std::map< String, Software > current_sws_
Definition: MzQuantMLHandler.h:147
const MSQuantifications * cmsq_
Definition: MzQuantMLHandler.h:96
std::map< int, DataProcessing > current_orderedps_
Definition: MzQuantMLHandler.h:148
Base class for XML handlers. 
Definition: XMLHandler.h:89
XML handler for MzQuantMLFile. 
Definition: MzQuantMLHandler.h:55
std::map< String, String > numden_r_ids_
Definition: MzQuantMLHandler.h:143
Representation of a controlled vocabulary. 
Definition: ControlledVocabulary.h:54
std::pair< int, DataProcessing > current_dp_
Definition: MzQuantMLHandler.h:149
std::vector< String > current_col_types_
Definition: MzQuantMLHandler.h:152
String current_cf_id_
Definition: MzQuantMLHandler.h:131
Definition: MSQuantifications.h:51
Size current_count_
Definition: MzQuantMLHandler.h:132
OPENMS_UINT64_TYPE UInt64
Unsigned integer type (64bit) 
Definition: Types.h:75
std::map< String, FeatureHandle > f_f_obj_
Definition: MzQuantMLHandler.h:141
MSQuantifications::Assay current_assay_
Definition: MzQuantMLHandler.h:136
std::map< String, String > f_cf_ids_
Definition: MzQuantMLHandler.h:139
std::vector< MetaInfo > up_stack_
Definition: MzQuantMLHandler.h:134
std::map< String, ConsensusFeature::Ratio > r_rtemp_
Definition: MzQuantMLHandler.h:142
size_t Size
Size type e.g. used as variable which can hold result of size() 
Definition: Types.h:144
Base class for all classes that want to report their progess. 
Definition: ProgressLogger.h:56
std::multimap< String, String > cm_cf_ids_
Definition: MzQuantMLHandler.h:138
ControlledVocabulary cv_
Controlled vocabulary (hopefully the psi-pi from OpenMS/share/OpenMS/CV/psi-pi.obo) ...
Definition: MzQuantMLHandler.h:90
std::map< String, ConsensusFeature::Ratio > r_r_obj_
Definition: MzQuantMLHandler.h:144
std::vector< DoubleReal > current_dm_values_
Definition: MzQuantMLHandler.h:153
String tag_
Definition: MzQuantMLHandler.h:92
MSQuantifications * msq_
Definition: MzQuantMLHandler.h:94
Map class based on the STL map (containing serveral convenience functions) 
Definition: Map.h:50
std::map< String, std::vector< ExperimentalSettings > > current_files_
Definition: MzQuantMLHandler.h:129
std::vector< DoubleReal > current_row_
Definition: MzQuantMLHandler.h:154