35 #ifndef OPENMS_SIMULATION_LABELING_SILACLABELER_H 
   36 #define OPENMS_SIMULATION_LABELING_SILACLABELER_H 
   75     void preCheck(
Param& ) 
const;
 
   92     void addModificationToPeptideHit_(
Feature& feature, 
const String& modification) 
const;
 
  104     bool canModificationBeApplied_(
const String& modification_id, 
const String& aa) 
const;
 
  106     void applyLabelToProteinHit_(
FeatureMapSim& protein_hit, 
const String& arginine_label, 
const String& lysine_label) 
const;
 
  108     void updateMembers_();
 
  123 #endif //#ifndef OPENMS_SIMULATION_LABELING_SILACLABELER_H 
String medium_channel_arginine_label_
Definition: SILACLabeler.h:99
A more convenient string class. 
Definition: String.h:56
static const int LIGHT_FEATURE_MAPID_
Map ID for the light/unlabeled channel. 
Definition: SILACLabeler.h:114
A container for features. 
Definition: FeatureMap.h:111
static const String getProductName()
name of the model (needed by Factory) 
Definition: SILACLabeler.h:69
String medium_channel_lysine_label_
Definition: SILACLabeler.h:98
static const int HEAVY_FEATURE_MAPID_
Map ID for the heavy labeled channel. 
Definition: SILACLabeler.h:118
String heavy_channel_arginine_label_
Definition: SILACLabeler.h:102
static const int MEDIUM_FEATURE_MAPID_
Map ID for the medium labeled channel. 
Definition: SILACLabeler.h:116
An LC-MS feature. 
Definition: Feature.h:66
Management and storage of parameters / INI files. 
Definition: Param.h:69
String heavy_channel_lysine_label_
Definition: SILACLabeler.h:101
std::vector< FeatureMapSim > FeatureMapSimVector
Sim FeatureMap Vector. 
Definition: SimTypes.h:80
Simulate SILAC experiments. 
Definition: SILACLabeler.h:51
int Int
Signed integer type. 
Definition: Types.h:100
Map class based on the STL map (containing serveral convenience functions) 
Definition: Map.h:50
Abstract base class for all kinds of labeling techniques. 
Definition: BaseLabeler.h:54
static BaseLabeler * create()
create new object (needed by Factory) 
Definition: SILACLabeler.h:63