35 #ifndef OPENMS_SIMULATION_RTSIMULATION_H 
   36 #define OPENMS_SIMULATION_RTSIMULATION_H 
   92     bool isRTColumnOn() 
const;
 
   95     void wrapSVM(std::vector<AASequence> & peptide_sequences, std::vector<DoubleReal> & predicted_retention_times);
 
  107     void setDefaultParams_();
 
  122     void calculateMT_(
FeatureMapSim & features, std::vector<DoubleReal> & predicted_retention_times);
 
  162     void updateMembers_();
 
SimRandomNumberGenerator const * rnd_gen_
Random number generator. 
Definition: RTSimulation.h:159
A more convenient string class. 
Definition: String.h:56
OpenMS::String rt_model_file_
Definition: RTSimulation.h:132
SimCoordinateType gradient_max_
Maximal observed gradient time. 
Definition: RTSimulation.h:142
A container for features. 
Definition: FeatureMap.h:111
Simulates/Predicts retention times for peptides or peptide separation. 
Definition: RTSimulation.h:55
SimCoordinateType gradient_min_
gradient ranges 
Definition: RTSimulation.h:140
DoubleReal egh_variance_scale_
EGH sigma scale parameter of the lorentzian variation. 
Definition: RTSimulation.h:155
SimCoordinateType rt_sampling_rate_
bin size in rt dimension 
Definition: RTSimulation.h:145
Wrapper class for random number generators used by the simulation classes. 
Definition: SimTypes.h:99
DoubleReal egh_variance_location_
EGH sigma value. 
Definition: RTSimulation.h:153
DoubleReal egh_tau_location_
EGH tau value. 
Definition: RTSimulation.h:148
A base class for all classes handling default parameters. 
Definition: DefaultParamHandler.h:90
Map class based on the STL map (containing serveral convenience functions) 
Definition: Map.h:50
DoubleReal egh_tau_scale_
EGH tau scale parameter of the lorentzian variation. 
Definition: RTSimulation.h:150
SimCoordinateType total_gradient_time_
Total gradient time. 
Definition: RTSimulation.h:135