| Classes | |
| class | AAIndex | 
| Representation of selected AAIndex properties.  More... | |
| class | AASequence | 
| Representation of a peptide/protein sequence.  More... | |
| class | Element | 
| Representation of an element.  More... | |
| class | ElementDB | 
| Stores elements.  More... | |
| class | EmpiricalFormula | 
| Representation of an empirical formula.  More... | |
| class | EnzymaticDigestion | 
| Class for the enzymatic digestion of proteins.  More... | |
| class | IsotopeDistribution | 
| Isotope distribution class.  More... | |
| class | ModificationDefinition | 
| Representation of modification definition.  More... | |
| class | ModificationDefinitionsSet | 
| Representation of a set of modification definitions.  More... | |
| class | ModificationsDB | 
| database which holds all residue modifications from UniMod  More... | |
| class | Residue | 
| Representation of a residue.  More... | |
| class | ResidueDB | 
| residue data base which holds residues  More... | |
| class | SvmTheoreticalSpectrumGenerator | 
| Simulates ms2 spectra with support vector machines.  More... | |
| class | SvmTheoreticalSpectrumGeneratorSet | 
| Loads SvmTheoreticalSpectrumGenerator instances for different charges.  More... | |
| class | SvmTheoreticalSpectrumGeneratorTrainer | 
| Train SVM models that are used by SvmTheoreticalSpectrumGenerator.  More... | |
| class | TheoreticalSpectrumGenerator | 
| Generates theoretical spectra with various options.  More... | |
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:25 using doxygen 1.8.5 |