Merge files according to experimental design. More...
#include <OpenMS/ANALYSIS/QUANTITATION/QuantitativeExperimentalDesign.h>
 
  
 | Public Member Functions | |
| QuantitativeExperimentalDesign () | |
| Default constructor.  More... | |
| virtual | ~QuantitativeExperimentalDesign () | 
| void | applyDesign2Resolver (ProteinResolver &resolver, TextFile &file, StringList &fileNames) | 
| xxxxxxx  More... | |
| void | applyDesign2Quantifier (PeptideAndProteinQuant &quantifier, TextFile &file, StringList &fileNames) | 
| xxxxxxx  More... | |
|  Public Member Functions inherited from DefaultParamHandler | |
| DefaultParamHandler (const String &name) | |
| Constructor with name that is displayed in error messages.  More... | |
| DefaultParamHandler (const DefaultParamHandler &rhs) | |
| Copy constructor.  More... | |
| virtual | ~DefaultParamHandler () | 
| Destructor.  More... | |
| virtual DefaultParamHandler & | operator= (const DefaultParamHandler &rhs) | 
| Assignment operator.  More... | |
| virtual bool | operator== (const DefaultParamHandler &rhs) const | 
| Equality operator.  More... | |
| void | setParameters (const Param ¶m) | 
| Sets the parameters.  More... | |
| const Param & | getParameters () const | 
| Non-mutable access to the parameters.  More... | |
| const Param & | getDefaults () const | 
| Non-mutable access to the default parameters.  More... | |
| const String & | getName () const | 
| Non-mutable access to the name.  More... | |
| void | setName (const String &name) | 
| Mutable access to the name.  More... | |
| const std::vector< String > & | getSubsections () const | 
| Non-mutable access to the registered subsections.  More... | |
| Private Member Functions | |
| QuantitativeExperimentalDesign (const QuantitativeExperimentalDesign &) | |
| Not implemented.  More... | |
| QuantitativeExperimentalDesign & | operator= (const QuantitativeExperimentalDesign &) | 
| Not implemented.  More... | |
| void | mergeFeatureMaps_ (FeatureMap<> &map, const String &experiment, StringList &file_paths) | 
| void | mergeConsensusMaps_ (ConsensusMap &map, const String &experiment, StringList &file_paths) | 
| void | mergeIDFiles_ (std::vector< ProteinIdentification > &proteins, std::vector< PeptideIdentification > &peptides, const String &experiment, StringList &file_paths) | 
| void | findRelevantFilePaths_ (std::map< String, StringList > &design2FileBaseName, std::map< String, StringList > &design2FilePath, StringList &filePaths) | 
| void | analyzeHeader_ (UInt &expCol, UInt &fileCol, StringList &header) | 
| Analyze header, which column represents filename and experimental setting.  More... | |
| void | getSeparator_ (String &separator) | 
| Helper class to get separator of the experimental design text file.  More... | |
| void | mapFiles2Design_ (std::map< String, StringList > &experiments, TextFile &file) | 
| helper class. which file name belongs to which experimental setting  More... | |
| Additional Inherited Members | |
|  Protected Member Functions inherited from DefaultParamHandler | |
| virtual void | updateMembers_ () | 
| This method is used to update extra member variables at the end of the setParameters() method.  More... | |
| void | defaultsToParam_ () | 
| Updates the parameters after the defaults have been set in the constructor.  More... | |
|  Protected Attributes inherited from DefaultParamHandler | |
| Param | param_ | 
| Container for current parameters.  More... | |
| Param | defaults_ | 
| Container for default parameters. This member should be filled in the constructor of derived classes!  More... | |
| std::vector< String > | subsections_ | 
| Container for registered subsections. This member should be filled in the constructor of derived classes!  More... | |
| String | error_name_ | 
| Name that is displayed in error messages during the parameter checking.  More... | |
| bool | check_defaults_ | 
| If this member is set to false no checking if parameters in done;.  More... | |
| bool | warn_empty_defaults_ | 
| If this member is set to false no warning is emitted when defaults are empty;.  More... | |
Merge files according to experimental design.
This class
Default constructor.
| 
 | virtual | 
| 
 | private | 
Not implemented.
| 
 | private | 
Analyze header, which column represents filename and experimental setting.
| void applyDesign2Quantifier | ( | PeptideAndProteinQuant & | quantifier, | 
| TextFile & | file, | ||
| StringList & | fileNames | ||
| ) | 
xxxxxxx
| void applyDesign2Resolver | ( | ProteinResolver & | resolver, | 
| TextFile & | file, | ||
| StringList & | fileNames | ||
| ) | 
xxxxxxx
| 
 | private | 
| 
 | private | 
Helper class to get separator of the experimental design text file.
| 
 | private | 
helper class. which file name belongs to which experimental setting
| 
 | private | 
| 
 | private | 
| 
 | private | 
| 
 | private | 
Not implemented.
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:27 using doxygen 1.8.5 |