Representation of a CV term. More...
#include <OpenMS/FORMAT/ControlledVocabulary.h>
| Public Types | |
| enum | XRefType { XSD_STRING = 0, XSD_INTEGER, XSD_DECIMAL, XSD_NEGATIVE_INTEGER, XSD_POSITIVE_INTEGER, XSD_NON_NEGATIVE_INTEGER, XSD_NON_POSITIVE_INTEGER, XSD_BOOLEAN, XSD_DATE, XSD_ANYURI, NONE } | 
| define xsd types allowed in cv term to specify their value-type  More... | |
| Public Member Functions | |
| CVTerm () | |
| Default constructor.  More... | |
| CVTerm (const CVTerm &rhs) | |
| CVTerm & | operator= (const CVTerm &rhs) | 
| String | toXMLString (const String &ref, const String &value=String("")) const | 
| get mzidentml formatted string. i.e. a cvparam xml element, ref should be the name of the ControlledVocabulary (i.e. cv.name()) containing the CVTerm (e.g. PSI-MS for the psi-ms.obo - gets loaded in all cases like that??), value can be empty if not available  More... | |
| String | toXMLString (const String &ref, const DataValue &value) const | 
| get mzidentml formatted string. i.e. a cvparam xml element, ref should be the name of the ControlledVocabulary (i.e. cv.name()) containing the CVTerm (e.g. PSI-MS for the psi-ms.obo - gets loaded in all cases like that??), value can be empty if not available  More... | |
| Static Public Member Functions | |
| static String | getXRefTypeName (XRefType type) | 
| Public Attributes | |
| String | name | 
| Text name.  More... | |
| String | id | 
| Identifier.  More... | |
| std::set< String > | parents | 
| The parent IDs.  More... | |
| std::set< String > | children | 
| The child IDs.  More... | |
| bool | obsolete | 
| Flag that indicates of the term is obsolete.  More... | |
| String | description | 
| Term description.  More... | |
| StringList | synonyms | 
| List of synonyms.  More... | |
| StringList | unparsed | 
| Unparsed lines from the definition file.  More... | |
| XRefType | xref_type | 
| xref value-type for the CV-term  More... | |
| StringList | xref_binary | 
| xref binary-data-type for the CV-term (list of all allowed data value types for the current binary data array)  More... | |
| std::set< String > | units | 
| unit accession ids, defined by relationship has units  More... | |
Representation of a CV term.
| enum XRefType | 
| CVTerm | ( | ) | 
Default constructor.
Referenced by MzMLHandler< MapType >::handleCVParam_().
get mzidentml formatted string. i.e. a cvparam xml element, ref should be the name of the ControlledVocabulary (i.e. cv.name()) containing the CVTerm (e.g. PSI-MS for the psi-ms.obo - gets loaded in all cases like that??), value can be empty if not available
get mzidentml formatted string. i.e. a cvparam xml element, ref should be the name of the ControlledVocabulary (i.e. cv.name()) containing the CVTerm (e.g. PSI-MS for the psi-ms.obo - gets loaded in all cases like that??), value can be empty if not available
| std::set<String> children | 
The child IDs.
| String description | 
Term description.
| String id | 
Identifier.
Referenced by MzMLHandler< MapType >::handleCVParam_(), MzMLHandler< MapType >::validateCV_(), MzMLHandler< MapType >::writeChromatogram_(), MzMLHandler< MapType >::writeCV_(), MzMLHandler< MapType >::writeHeader_(), MzMLHandler< MapType >::writeSoftware_(), MzMLHandler< MapType >::writeSourceFile_(), and MzMLHandler< MapType >::writeSpectrum_().
| String name | 
Text name.
Referenced by MzMLHandler< MapType >::handleCVParam_(), MzMLHandler< MapType >::validateCV_(), MzMLHandler< MapType >::writeChromatogram_(), MzMLHandler< MapType >::writeCV_(), MzMLHandler< MapType >::writeHeader_(), MzMLHandler< MapType >::writeSoftware_(), MzMLHandler< MapType >::writeSourceFile_(), and MzMLHandler< MapType >::writeSpectrum_().
| bool obsolete | 
Flag that indicates of the term is obsolete.
Referenced by MzMLHandler< MapType >::handleCVParam_().
| std::set<String> parents | 
The parent IDs.
| StringList synonyms | 
List of synonyms.
| std::set<String> units | 
unit accession ids, defined by relationship has units
| StringList unparsed | 
Unparsed lines from the definition file.
| StringList xref_binary | 
xref binary-data-type for the CV-term (list of all allowed data value types for the current binary data array)
| XRefType xref_type | 
xref value-type for the CV-term
Referenced by MzMLHandler< MapType >::handleCVParam_().
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:30 using doxygen 1.8.5 |