| calc_correct_ | PosteriorErrorProbabilityModel | private | 
  | calc_incorrect_ | PosteriorErrorProbabilityModel | private | 
  | check_defaults_ | DefaultParamHandler | protected | 
  | computeMaxLikelihood(std::vector< DoubleReal > &incorrect_density, std::vector< DoubleReal > &correct_density) | PosteriorErrorProbabilityModel |  | 
  | computeProbability(DoubleReal score) | PosteriorErrorProbabilityModel |  | 
  | correctly_assigned_fit_param_ | PosteriorErrorProbabilityModel | private | 
  | DefaultParamHandler(const String &name) | DefaultParamHandler |  | 
  | DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |  | 
  | defaults_ | DefaultParamHandler | protected | 
  | defaultsToParam_() | DefaultParamHandler | protected | 
  | error_name_ | DefaultParamHandler | protected | 
  | fillDensities(std::vector< double > &x_scores, std::vector< DoubleReal > &incorrect_density, std::vector< DoubleReal > &correct_density) | PosteriorErrorProbabilityModel |  | 
  | fit(std::vector< double > &search_engine_scores) | PosteriorErrorProbabilityModel |  | 
  | fit(std::vector< double > &search_engine_scores, std::vector< double > &probabilities) | PosteriorErrorProbabilityModel |  | 
  | getBothGnuplotFormula(const GaussFitter::GaussFitResult &incorrect, const GaussFitter::GaussFitResult &correct) const | PosteriorErrorProbabilityModel |  | 
  | getCorrectlyAssignedFitResult() const | PosteriorErrorProbabilityModel | inline | 
  | getDefaults() const | DefaultParamHandler |  | 
  | getGauss(DoubleReal x, const GaussFitter::GaussFitResult ¶ms) | PosteriorErrorProbabilityModel | inline | 
  | getGaussGnuplotFormula(const GaussFitter::GaussFitResult ¶ms) const | PosteriorErrorProbabilityModel |  | 
  | getGumbel(DoubleReal x, const GaussFitter::GaussFitResult ¶ms) | PosteriorErrorProbabilityModel | inline | 
  | getGumbelGnuplotFormula(const GaussFitter::GaussFitResult ¶ms) const | PosteriorErrorProbabilityModel |  | 
  | getIncorrectlyAssignedFitResult() const | PosteriorErrorProbabilityModel | inline | 
  | getName() const | DefaultParamHandler |  | 
  | getNegativeGnuplotFormula_ | PosteriorErrorProbabilityModel | private | 
  | getNegativePrior() const | PosteriorErrorProbabilityModel | inline | 
  | getParameters() const | DefaultParamHandler |  | 
  | getPositiveGnuplotFormula_ | PosteriorErrorProbabilityModel | private | 
  | getSmallestScore() | PosteriorErrorProbabilityModel | inline | 
  | getSubsections() const | DefaultParamHandler |  | 
  | incorrectly_assigned_fit_param_ | PosteriorErrorProbabilityModel | private | 
  | InitPlots(std::vector< double > &x_scores) | PosteriorErrorProbabilityModel |  | 
  | max_correctly_ | PosteriorErrorProbabilityModel | private | 
  | max_incorrectly_ | PosteriorErrorProbabilityModel | private | 
  | negative_prior_ | PosteriorErrorProbabilityModel | private | 
  | one_minus_sum_post(std::vector< DoubleReal > &incorrect_density, std::vector< DoubleReal > &correct_density) | PosteriorErrorProbabilityModel |  | 
  | operator=(const PosteriorErrorProbabilityModel &rhs) | PosteriorErrorProbabilityModel | private | 
  | OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual | 
  | operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual | 
  | param_ | DefaultParamHandler | protected | 
  | plotTargetDecoyEstimation(std::vector< double > &target, std::vector< double > &decoy) | PosteriorErrorProbabilityModel |  | 
  | PosteriorErrorProbabilityModel() | PosteriorErrorProbabilityModel |  | 
  | PosteriorErrorProbabilityModel(const PosteriorErrorProbabilityModel &rhs) | PosteriorErrorProbabilityModel | private | 
  | setName(const String &name) | DefaultParamHandler |  | 
  | setParameters(const Param ¶m) | DefaultParamHandler |  | 
  | smallest_score_ | PosteriorErrorProbabilityModel | private | 
  | subsections_ | DefaultParamHandler | protected | 
  | sum_neg_sigma(std::vector< double > &x_scores, std::vector< DoubleReal > &incorrect_density, std::vector< DoubleReal > &correct_density, DoubleReal positive_mean) | PosteriorErrorProbabilityModel |  | 
  | sum_neg_x0(std::vector< double > &x_scores, std::vector< DoubleReal > &incorrect_density, std::vector< DoubleReal > &correct_density) | PosteriorErrorProbabilityModel |  | 
  | sum_pos_sigma(std::vector< double > &x_scores, std::vector< DoubleReal > &incorrect_density, std::vector< DoubleReal > &correct_density, DoubleReal positive_mean) | PosteriorErrorProbabilityModel |  | 
  | sum_pos_x0(std::vector< double > &x_scores, std::vector< DoubleReal > &incorrect_density, std::vector< DoubleReal > &correct_density) | PosteriorErrorProbabilityModel |  | 
  | sum_post(std::vector< DoubleReal > &incorrect_density, std::vector< DoubleReal > &correct_density) | PosteriorErrorProbabilityModel |  | 
  | updateMembers_() | DefaultParamHandler | protectedvirtual | 
  | warn_empty_defaults_ | DefaultParamHandler | protected | 
  | ~DefaultParamHandler() | DefaultParamHandler | virtual | 
  | ~PosteriorErrorProbabilityModel() | PosteriorErrorProbabilityModel | virtual |