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| static void | sortPSM_ (std::vector< PeptideIdentification >::iterator begin, std::vector< PeptideIdentification >::iterator end) | 
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| static void | keepFirstPSM_ (std::vector< PeptideIdentification >::iterator begin, std::vector< PeptideIdentification >::iterator end) | 
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| static void | partitionIntoRuns_ (const std::vector< PeptideIdentification > &pep_ids, const std::vector< ProteinIdentification > &pro_ids, std::map< String, std::vector< PeptideIdentification > > &map_run_to_pepids, std::map< String, std::vector< ProteinIdentification > > &map_run_to_proids) | 
|  | Extract protein and peptide identifications for each run. maps are assumed empty.  More... 
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| static void | createProteinToPeptideLinks_ (const std::map< String, std::vector< PeptideIdentification > > &map_run_to_pepids, MapAccPepType &map_run_accession_to_pephits) | 
|  | create links from protein to peptides  More... 
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| static String | extractProteinAccession_ (const PeptideHit &peptide_hit) | 
|  | Extracts, if possible a unique protein accession for a peptide hit in mzTab format. Otherwise NA is returned.  More... 
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| static String | extractPeptideModifications_ (const PeptideHit &peptide_hit) | 
|  | Extracts, modifications and positions of a peptide hit in mzTab format.  More... 
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| static String | mapSearchEngineToCvParam_ (const String &openms_search_engine_name) | 
|  | Map search engine identifier to CV, param etc.  More... 
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| static String | mapSearchEngineScoreToCvParam_ (const String &openms_search_engine_name, DoubleReal score, String score_type) | 
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| static String | extractNumPeptides_ (const String &common_identifier, const String &protein_accession, const MapAccPepType &map_run_accesion_to_peptides) | 
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| static String | extractNumPeptidesDistinct_ (String common_identifier, String protein_accession, const MapAccPepType &map_run_accesion_to_peptides) | 
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| static String | extractNumPeptidesUnambiguous_ (String common_identifier, String protein_accession, const MapAccPepType &map_run_accesion_to_peptides) | 
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| static std::map< String, Size > | extractNumberOfSubSamples_ (const std::map< String, std::vector< ProteinIdentification > > &map_run_to_proids) | 
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| static void | writePeptideHeader_ (SVOutStream &output, std::map< String, Size > n_sub_samples) | 
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| static void | writeProteinHeader_ (SVOutStream &output, std::map< String, Size > n_sub_samples) | 
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| static void | writeProteinData_ (SVOutStream &output, const ProteinIdentification &prot_id, Size run_count, String input_filename, bool has_coverage, const MapAccPepType &map_run_accesion_to_peptides, const std::map< String, Size > &map_run_to_num_sub) | 
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File adapter for MzTab files.