| AccurateMassSearchEngine() | AccurateMassSearchEngine |  | 
  | begin_ | ProgressLogger | mutableprotected | 
  | check_defaults_ | DefaultParamHandler | protected | 
  | CMD enum value | ProgressLogger |  | 
  | computeCosineSim_(const std::vector< DoubleReal > &x, const std::vector< DoubleReal > &y) | AccurateMassSearchEngine | private | 
  | computeEuclideanDist_(const std::vector< DoubleReal > &x, const std::vector< DoubleReal > &y) | AccurateMassSearchEngine | private | 
  | computeIsotopePatternSimilarity_(const Feature &, const EmpiricalFormula &) | AccurateMassSearchEngine | private | 
  | computeNeutralMassFromAdduct_(const DoubleReal &, const String &, DoubleReal &, DoubleReal &) | AccurateMassSearchEngine | private | 
  | DefaultParamHandler(const String &name) | DefaultParamHandler |  | 
  | DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |  | 
  | defaults_ | DefaultParamHandler | protected | 
  | defaultsToParam_() | DefaultParamHandler | protected | 
  | dlg_ | ProgressLogger | mutableprotected | 
  | end_ | ProgressLogger | mutableprotected | 
  | endProgress() const | ProgressLogger |  | 
  | error_name_ | DefaultParamHandler | protected | 
  | exportMzTab_(const QueryResultsTable &, MzTab &) | AccurateMassSearchEngine | private | 
  | getDefaults() const | DefaultParamHandler |  | 
  | getLogType() const | ProgressLogger |  | 
  | getName() const | DefaultParamHandler |  | 
  | getParameters() const | DefaultParamHandler |  | 
  | getSubsections() const | DefaultParamHandler |  | 
  | GUI enum value | ProgressLogger |  | 
  | hmdb_properties_mapping_ | AccurateMassSearchEngine | private | 
  | HMDBPropsMapping typedef | AccurateMassSearchEngine | private | 
  | ion_mode_ | AccurateMassSearchEngine | private | 
  | iso_similarity_ | AccurateMassSearchEngine | private | 
  | last_invoke_ | ProgressLogger | mutableprotected | 
  | LogType enum name | ProgressLogger |  | 
  | mass_error_unit_ | AccurateMassSearchEngine | private | 
  | mass_error_value_ | AccurateMassSearchEngine | private | 
  | mass_formula_mapping_ | AccurateMassSearchEngine | private | 
  | mass_id_mapping_ | AccurateMassSearchEngine | private | 
  | MassIDMapping typedef | AccurateMassSearchEngine | private | 
  | masskey_table_ | AccurateMassSearchEngine | private | 
  | neg_adducts_ | AccurateMassSearchEngine | private | 
  | neg_adducts_fname_ | AccurateMassSearchEngine | private | 
  | NONE enum value | ProgressLogger |  | 
  | operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual | 
  | operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual | 
  | param_ | DefaultParamHandler | protected | 
  | parseAdductsFile_(const String &) | AccurateMassSearchEngine | private | 
  | parseAdductString_(const String &, std::vector< String > &) | AccurateMassSearchEngine | private | 
  | parseMappingFile_(const String &) | AccurateMassSearchEngine | private | 
  | parseStructMappingFile_(const String &) | AccurateMassSearchEngine | private | 
  | pos_adducts_ | AccurateMassSearchEngine | private | 
  | pos_adducts_fname_ | AccurateMassSearchEngine | private | 
  | ProgressLogger() | ProgressLogger |  | 
  | queryByConsensusFeature(const ConsensusFeature &, const Size &, const Size &, std::vector< AccurateMassSearchResult > &) | AccurateMassSearchEngine |  | 
  | queryByFeature(const Feature &, const Size &, std::vector< AccurateMassSearchResult > &) | AccurateMassSearchEngine |  | 
  | queryByMass(const DoubleReal &, const DoubleReal &, std::vector< AccurateMassSearchResult > &) | AccurateMassSearchEngine |  | 
  | QueryResultsTable typedef | AccurateMassSearchEngine | private | 
  | recursion_depth_ | ProgressLogger | protectedstatic | 
  | run(const FeatureMap<> &, MzTab &) | AccurateMassSearchEngine |  | 
  | run(const ConsensusMap &, MzTab &) | AccurateMassSearchEngine |  | 
  | searchMass_(const DoubleReal &, std::vector< Size > &hit_indices) | AccurateMassSearchEngine | private | 
  | setLogType(LogType type) const | ProgressLogger |  | 
  | setName(const String &name) | DefaultParamHandler |  | 
  | setParameters(const Param ¶m) | DefaultParamHandler |  | 
  | setProgress(SignedSize value) const | ProgressLogger |  | 
  | startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger |  | 
  | stop_watch_ | ProgressLogger | mutableprotected | 
  | subsections_ | DefaultParamHandler | protected | 
  | type_ | ProgressLogger | mutableprotected | 
  | updateMembers_() | AccurateMassSearchEngine | protectedvirtual | 
  | value_ | ProgressLogger | mutableprotected | 
  | warn_empty_defaults_ | DefaultParamHandler | protected | 
  | ~AccurateMassSearchEngine() | AccurateMassSearchEngine | virtual | 
  | ~DefaultParamHandler() | DefaultParamHandler | virtual | 
  | ~ProgressLogger() | ProgressLogger |  |