| addSingleChargedIons_(Map< DoubleReal, IonScore > &ion_scores, PeakSpectrum &CID_spec) | CompNovoIonScoringBase | protected | 
  | check_defaults_ | DefaultParamHandler | protected | 
  | CHILD enum value | CompNovoIonScoringBase |  | 
  | classifyIsotopes_(const PeakSpectrum &spec, PeakSpectrum::ConstIterator it) | CompNovoIonScoringBase | protected | 
  | CompNovoIonScoring() | CompNovoIonScoring |  | 
  | CompNovoIonScoring(const CompNovoIonScoring &source) | CompNovoIonScoring |  | 
  | CompNovoIonScoringBase() | CompNovoIonScoringBase |  | 
  | CompNovoIonScoringBase(const CompNovoIonScoringBase &source) | CompNovoIonScoringBase |  | 
  | DefaultParamHandler(const String &name) | DefaultParamHandler |  | 
  | DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |  | 
  | defaults_ | DefaultParamHandler | protected | 
  | defaultsToParam_() | DefaultParamHandler | protected | 
  | error_name_ | DefaultParamHandler | protected | 
  | fragment_mass_tolerance_ | CompNovoIonScoringBase | protected | 
  | getDefaults() const | DefaultParamHandler |  | 
  | getName() const | DefaultParamHandler |  | 
  | getParameters() const | DefaultParamHandler |  | 
  | getSubsections() const | DefaultParamHandler |  | 
  | initIsotopeDistributions_() | CompNovoIonScoringBase | protected | 
  | IonScore typedef | CompNovoIonScoring |  | 
  | isotope_distributions_ | CompNovoIonScoringBase | protected | 
  | IsotopeType typedef | CompNovoIonScoring |  | 
  | LONE enum value | CompNovoIonScoringBase |  | 
  | operator=(const CompNovoIonScoring &source) | CompNovoIonScoring |  | 
  | OpenMS::CompNovoIonScoringBase::operator=(const CompNovoIonScoringBase &source) | CompNovoIonScoringBase |  | 
  | OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual | 
  | operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual | 
  | param_ | DefaultParamHandler | protected | 
  | PARENT enum value | CompNovoIonScoringBase |  | 
  | scoreETDFeatures_(Size charge, DoubleReal precursor_weight, Map< DoubleReal, IonScore > &CID_nodes, const PeakSpectrum &CID_orig_spec, const PeakSpectrum &ETD_orig_spec) | CompNovoIonScoring | protected | 
  | scoreIsotopes(const PeakSpectrum &CID_spec, PeakSpectrum::ConstIterator it, Size charge) | CompNovoIonScoringBase |  | 
  | scoreIsotopes_(const PeakSpectrum &spec, PeakSpectrum::ConstIterator it, Map< DoubleReal, IonScore > &CID_nodes, Size charge=1) | CompNovoIonScoringBase | protected | 
  | scoreSpectra(Map< DoubleReal, IonScore > &CID_ion_scores, PeakSpectrum &CID_spec, PeakSpectrum &ETD_spec, DoubleReal precursor_weight, Size charge) | CompNovoIonScoring |  | 
  | scoreWitnessSet_(Size charge, DoubleReal precursor_weight, Map< DoubleReal, IonScore > &CID_nodes, const PeakSpectrum &CID_orig_spec) | CompNovoIonScoring | protectedvirtual | 
  | setName(const String &name) | DefaultParamHandler |  | 
  | setParameters(const Param ¶m) | DefaultParamHandler |  | 
  | subsections_ | DefaultParamHandler | protected | 
  | updateMembers_() | CompNovoIonScoringBase | protectedvirtual | 
  | warn_empty_defaults_ | DefaultParamHandler | protected | 
  | ~CompNovoIonScoring() | CompNovoIonScoring | virtual | 
  | ~CompNovoIonScoringBase() | CompNovoIonScoringBase | virtual | 
  | ~DefaultParamHandler() | DefaultParamHandler | virtual |