Namespace used to hide implementation details from users. More...
| Namespaces | |
| ClassTest | |
| Namespace for class tests. | |
| Classes | |
| class | DIntervalBase | 
| A base class for D-dimensional interval.  More... | |
| struct | FileMapping | 
| Maps input/output files to filenames for the external program.  More... | |
| struct | MappingParam | 
| Filename mappings for all input/output files.  More... | |
| struct | ToolDescriptionInternal | 
| ToolDescription Class.  More... | |
| struct | ToolExternalDetails | 
| struct | ToolDescription | 
| class | IntensityIteratorWrapper | 
| An iterator wrapper to access peak intensities instead of the peak itself.  More... | |
| class | AcqusHandler | 
| Read-only acqus File handler for XMass Analysis.  More... | |
| class | FidHandler | 
| Read-only fid File handler for XMass Analysis.  More... | |
| class | MascotXMLHandler | 
| Handler that is used for parsing MascotXML data.  More... | |
| class | MzDataHandler | 
| XML handler for MzDataFile.  More... | |
| class | MzIdentMLHandler | 
| XML handler for MzIdentMLFile.  More... | |
| class | MzMLHandler | 
| XML handler for MzMLFile.  More... | |
| class | MzQuantMLHandler | 
| XML handler for MzQuantMLFile.  More... | |
| class | MzXMLHandler | 
| XML handlers for MzXMLFile.  More... | |
| class | ParamXMLHandler | 
| XML Handler for Param files.  More... | |
| class | PTMXMLHandler | 
| Handler that is used for parsing PTMXML data.  More... | |
| class | ToolDescriptionHandler | 
| XML handler for ToolDescriptionFile.  More... | |
| class | TraMLHandler | 
| XML handler for TraMLFile.  More... | |
| class | UnimodXMLHandler | 
| Handler that is used for parsing XTandemXML data.  More... | |
| class | StringManager | 
| Helper class for XML parsing that handles the memory management for conversions of Xerces strings.  More... | |
| class | XMLHandler | 
| Base class for XML handlers.  More... | |
| struct | XTandemInfileNote | 
| Note representation of bioml structure used by XTandem.  More... | |
| class | XTandemInfileXMLHandler | 
| Handler that is used for parsing XTandemXML data.  More... | |
| class | MzDataValidator | 
| Semantically validates MzXML files.  More... | |
| class | MzIdentMLValidator | 
| Semantically validates MzXML files.  More... | |
| class | MzMLValidator | 
| Semantically validates MzXML files.  More... | |
| class | MzQuantMLValidator | 
| Semantically validates MzQuantML files.  More... | |
| class | SemanticValidator | 
| Semantically validates XML files using CVMappings and a ControlledVocabulary.  More... | |
| class | TraMLValidator | 
| Semantically validates MzXML files.  More... | |
| class | XMLFile | 
| Base class for loading/storing XML files that have a handler derived from XMLHandler.  More... | |
| class | OpenMSXMLFormatTarget | 
| class | AreaIterator | 
| Forward iterator for an area of peaks in an experiment.  More... | |
| struct | IntensityLess | 
| Comparator that allows to compare the indices of two peaks by their intensity.  More... | |
| struct | IntensityIterator | 
| Intensity iterator for a FeatureFinderDefs::IndexSet.  More... | |
| struct | MzIterator | 
| m/z iterator for a FeatureFinderDefs::IndexSet  More... | |
| struct | RtIterator | 
| Retention time iterator for a FeatureFinderDefs::IndexSet.  More... | |
| class | Spectrum1DPrefDialog | 
| Preferences dialog for Spectrum1DWidget.  More... | |
| class | Spectrum2DPrefDialog | 
| Preferences dialog for Spectrum2DWidget.  More... | |
| class | Spectrum3DPrefDialog | 
| Preferences dialog for Spectrum3DWidget.  More... | |
| class | TOPPViewPrefDialog | 
| Preferences dialog for TOPPView.  More... | |
| class | ListTable | 
| class | ListEditorDelegate | 
| Internal delegate class.  More... | |
| class | OpenMSLineEdit | 
| Custom QLineEdit which emits a signal when losing focus (such that we can commit its data)  More... | |
| class | ParamEditorDelegate | 
| Internal delegate class for QTreeWidget.  More... | |
| class | ParamTree | 
| QTreeWidget that emits a signal whenever a new row is selected.  More... | |
| struct | OpenMSOSInfo | 
| Enumerations | |
| enum | OpenMS_OS { OS_UNKNOWN, OS_MACOS, OS_WINDOWS, OS_LINUX } | 
| enum | OpenMS_Architecture { ARCH_UNKOWN, ARCH_32BIT, ARCH_64BIT } | 
| Functions | |
| bool | PermutScoreComparator (const CompNovoIdentificationBase::Permut &p1, const CompNovoIdentificationBase::Permut &p2) | 
| template<UInt D> | |
| std::ostream & | operator<< (std::ostream &os, const DIntervalBase< D > &rhs) | 
| Print the contents to a stream.  More... | |
| template<typename IteratorT > | |
| IntensityIteratorWrapper < IteratorT > | intensityIteratorWrapper (const IteratorT &rhs) | 
| make-function so that we need no write out all those type names to get the wrapped iterator.  More... | |
| void | writeXMLEscape (const String &to_escape, std::ostream &os) | 
| Escapes a string to be storable into an XML File.  More... | |
| String | writeXMLEscape (const String &to_escape) | 
| Escapes a string and returns the escaped string.  More... | |
| String | encodeTab (const String &to_encode) | 
| Encodes tabs '' in the string as 	 and returns the encoded string.  More... | |
| static OpenMSOSInfo | getOSInfo () | 
| Variables | |
| const char * | OpenMS_locale | 
| std::string | OpenMS_OSNames [] = {"unkown", "MacOS", "Windows", "Linux"} | 
| std::string | OpenMS_ArchNames [] = {"unkown", "32bit", "64bit"} | 
Namespace used to hide implementation details from users.
| enum OpenMS_Architecture | 
| enum OpenMS_OS | 
| String OpenMS::Internal::encodeTab | ( | const String & | to_encode | ) | 
Encodes tabs '' in the string as 	 and returns the encoded string.
| to_encode | The String to encode. | 
| 
 | static | 
References OpenMSOSInfo::arch, ARCH_32BIT, ARCH_64BIT, OpenMSOSInfo::os, OS_LINUX, OS_MACOS, OpenMSOSInfo::os_version, and OS_WINDOWS.
| IntensityIteratorWrapper<IteratorT> OpenMS::Internal::intensityIteratorWrapper | ( | const IteratorT & | rhs | ) | 
make-function so that we need no write out all those type names to get the wrapped iterator.
Referenced by MorphologicalFilter::filter().
| std::ostream& OpenMS::Internal::operator<< | ( | std::ostream & | os, | 
| const DIntervalBase< D > & | rhs | ||
| ) | 
Print the contents to a stream.
References DIntervalBase< D >::minPosition().
| bool OpenMS::Internal::PermutScoreComparator | ( | const CompNovoIdentificationBase::Permut & | p1, | 
| const CompNovoIdentificationBase::Permut & | p2 | ||
| ) | 
| void OpenMS::Internal::writeXMLEscape | ( | const String & | to_escape, | 
| std::ostream & | os | ||
| ) | 
Escapes a string to be storable into an XML File.
Some characters must be escaped which are allowed in user params. E.g. > and & are not in XML and need to be escaped. Parsing those escaped strings is automatically done by xerces
| String OpenMS::Internal::writeXMLEscape | ( | const String & | to_escape | ) | 
Escapes a string and returns the escaped string.
Some characters must be escaped which are allowed in user params. E.g. > and & are not in XML and need to be escaped. Parsing those escaped strings is automatically done by xerces
| std::string OpenMS_ArchNames[] = {"unkown", "32bit", "64bit"} | 
Referenced by OpenMSOSInfo::getArchAsString().
| const char* OpenMS_locale | 
Used to set the locale to "C", to avoid problems on machines with incompatible locale settings (this overwrites the locale setting of the environment!)
| std::string OpenMS_OSNames[] = {"unkown", "MacOS", "Windows", "Linux"} | 
Referenced by OpenMSOSInfo::getOSAsString().
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:37 using doxygen 1.8.5 |