| filterIdentificationsByBestHits(const PeptideIdentification &identification, PeptideIdentification &filtered_identification, bool strict=false) | IDFilter |  | 
  | filterIdentificationsByBestNHits(const IdentificationType &identification, Size n, IdentificationType &filtered_identification) | IDFilter | inline | 
  | filterIdentificationsByBestNHits(MSExperiment< PeakT > &experiment, Size n) | IDFilter | inline | 
  | filterIdentificationsByBestNToMHits(const IdentificationType &identification, Size n, Size m, IdentificationType &filtered_identification) | IDFilter | inline | 
  | filterIdentificationsByCharge(const PeptideIdentification &identification, Int charge, PeptideIdentification &filtered_identification) | IDFilter |  | 
  | filterIdentificationsByExclusionPeptides(const PeptideIdentification &identification, const std::set< String > &peptides, PeptideIdentification &filtered_identification) | IDFilter |  | 
  | filterIdentificationsByLength(const PeptideIdentification &identification, PeptideIdentification &filtered_identification, Size min_length, Size max_length=UINT_MAX) | IDFilter |  | 
  | filterIdentificationsByMzError(const PeptideIdentification &identification, DoubleReal mass_error, bool unit_ppm, PeptideIdentification &filtered_identification) | IDFilter |  | 
  | filterIdentificationsByProteins(const PeptideIdentification &identification, const std::vector< FASTAFile::FASTAEntry > &proteins, PeptideIdentification &filtered_identification, bool no_protein_identifiers=false) | IDFilter |  | 
  | filterIdentificationsByProteins(const ProteinIdentification &identification, const std::vector< FASTAFile::FASTAEntry > &proteins, ProteinIdentification &filtered_identification) | IDFilter |  | 
  | filterIdentificationsByProteins(MSExperiment< PeakT > &experiment, const std::vector< FASTAFile::FASTAEntry > &proteins) | IDFilter | inline | 
  | filterIdentificationsByRTFirstDimPValues(const PeptideIdentification &identification, PeptideIdentification &filtered_identification, DoubleReal p_value=0.05) | IDFilter |  | 
  | filterIdentificationsByRTPValues(const PeptideIdentification &identification, PeptideIdentification &filtered_identification, DoubleReal p_value=0.05) | IDFilter |  | 
  | filterIdentificationsByScore(const IdentificationType &identification, DoubleReal threshold_score, IdentificationType &filtered_identification) | IDFilter | inline | 
  | filterIdentificationsByScores(MSExperiment< PeakT > &experiment, DoubleReal peptide_threshold_score, DoubleReal protein_threshold_score) | IDFilter | inline | 
  | filterIdentificationsByThreshold(const IdentificationType &identification, DoubleReal threshold_fraction, IdentificationType &filtered_identification) | IDFilter | inline | 
  | filterIdentificationsByThresholds(MSExperiment< PeakT > &experiment, DoubleReal peptide_threshold_fraction, DoubleReal protein_threshold_fraction) | IDFilter | inline | 
  | filterIdentificationsByVariableModifications(const PeptideIdentification &identification, const std::vector< String > &fixed_modifications, PeptideIdentification &filtered_identification) | IDFilter |  | 
  | filterIdentificationsUnique(const PeptideIdentification &identification, PeptideIdentification &filtered_identification) | IDFilter |  | 
  | IDFilter() | IDFilter |  | 
  | removeUnreferencedProteinHits(const ProteinIdentification &identification, const std::vector< PeptideIdentification > peptide_identifications, ProteinIdentification &filtered_identification) | IDFilter |  | 
  | ~IDFilter() | IDFilter | virtual |