Search parameters of the DB search. More...
#include <OpenMS/METADATA/ProteinIdentification.h>
 
  
 | Public Member Functions | |
| SearchParameters () | |
| bool | operator== (const SearchParameters &rhs) const | 
| bool | operator!= (const SearchParameters &rhs) const | 
|  Public Member Functions inherited from MetaInfoInterface | |
| MetaInfoInterface () | |
| constructor  More... | |
| MetaInfoInterface (const MetaInfoInterface &rhs) | |
| copy constructor  More... | |
| ~MetaInfoInterface () | |
| destructor  More... | |
| MetaInfoInterface & | operator= (const MetaInfoInterface &rhs) | 
| assignment operator  More... | |
| bool | operator== (const MetaInfoInterface &rhs) const | 
| Equality operator.  More... | |
| bool | operator!= (const MetaInfoInterface &rhs) const | 
| Equality operator.  More... | |
| const DataValue & | getMetaValue (const String &name) const | 
| returns the value corresponding to a string  More... | |
| const DataValue & | getMetaValue (UInt index) const | 
| returns the value corresponding to an index  More... | |
| bool | metaValueExists (const String &name) const | 
| returns if this MetaInfo is set  More... | |
| bool | metaValueExists (UInt index) const | 
| returns if this MetaInfo is set  More... | |
| void | setMetaValue (const String &name, const DataValue &value) | 
| sets the DataValue corresponding to a name  More... | |
| void | setMetaValue (UInt index, const DataValue &value) | 
| sets the DataValue corresponding to an index  More... | |
| void | removeMetaValue (const String &name) | 
| Removes the DataValue corresponding to nameif it exists.  More... | |
| void | removeMetaValue (UInt index) | 
| Removes the DataValue corresponding to indexif it exists.  More... | |
| void | getKeys (std::vector< String > &keys) const | 
| fills the given vector with a list of all keys for which a value is set  More... | |
| void | getKeys (std::vector< UInt > &keys) const | 
| fills the given vector with a list of all keys for which a value is set  More... | |
| bool | isMetaEmpty () const | 
| returns if the MetaInfo is empty  More... | |
| void | clearMetaInfo () | 
| removes all meta values  More... | |
| Public Attributes | |
| String | db | 
| The used database.  More... | |
| String | db_version | 
| The database version.  More... | |
| String | taxonomy | 
| The taxonomy restriction.  More... | |
| String | charges | 
| The allowed charges for the search.  More... | |
| PeakMassType | mass_type | 
| Mass type of the peaks.  More... | |
| std::vector< String > | fixed_modifications | 
| Used fixed modifications.  More... | |
| std::vector< String > | variable_modifications | 
| Allowed variable modifications.  More... | |
| DigestionEnzyme | enzyme | 
| The enzyme used for cleavage.  More... | |
| UInt | missed_cleavages | 
| The number of allowed missed cleavages.  More... | |
| DoubleReal | peak_mass_tolerance | 
| Mass tolerance of fragment ions (Dalton)  More... | |
| DoubleReal | precursor_tolerance | 
| Mass tolerance of precursor ions (Dalton)  More... | |
| Additional Inherited Members | |
|  Static Public Member Functions inherited from MetaInfoInterface | |
| static MetaInfoRegistry & | metaRegistry () | 
| retuns a reference to the MetaInfoRegistry  More... | |
|  Protected Member Functions inherited from MetaInfoInterface | |
| void | createIfNotExists_ () | 
| creates the MetaInfo object if it does not exist  More... | |
|  Protected Attributes inherited from MetaInfoInterface | |
| MetaInfo * | meta_ | 
| pointer to the MetaInfo object. 0 by default  More... | |
Search parameters of the DB search.
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 | inline | 
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 | inline | 
References ProteinIdentification::SearchParameters::charges, ProteinIdentification::SearchParameters::db, ProteinIdentification::SearchParameters::db_version, ProteinIdentification::SearchParameters::enzyme, ProteinIdentification::SearchParameters::fixed_modifications, ProteinIdentification::SearchParameters::mass_type, ProteinIdentification::SearchParameters::missed_cleavages, ProteinIdentification::SearchParameters::peak_mass_tolerance, ProteinIdentification::SearchParameters::precursor_tolerance, ProteinIdentification::SearchParameters::taxonomy, and ProteinIdentification::SearchParameters::variable_modifications.
| String charges | 
The allowed charges for the search.
Referenced by ProteinIdentification::SearchParameters::operator==().
| String db | 
The used database.
Referenced by DBAdapter::loadExperiment(), and ProteinIdentification::SearchParameters::operator==().
| String db_version | 
The database version.
Referenced by ProteinIdentification::SearchParameters::operator==().
| DigestionEnzyme enzyme | 
The enzyme used for cleavage.
Referenced by ProteinIdentification::SearchParameters::operator==().
| std::vector<String> fixed_modifications | 
Used fixed modifications.
Referenced by ProteinIdentification::SearchParameters::operator==().
| PeakMassType mass_type | 
Mass type of the peaks.
Referenced by ProteinIdentification::SearchParameters::operator==().
| UInt missed_cleavages | 
The number of allowed missed cleavages.
Referenced by ProteinIdentification::SearchParameters::operator==().
| DoubleReal peak_mass_tolerance | 
Mass tolerance of fragment ions (Dalton)
Referenced by ProteinIdentification::SearchParameters::operator==().
| DoubleReal precursor_tolerance | 
Mass tolerance of precursor ions (Dalton)
Referenced by ProteinIdentification::SearchParameters::operator==().
| String taxonomy | 
The taxonomy restriction.
Referenced by ProteinIdentification::SearchParameters::operator==().
| std::vector<String> variable_modifications | 
Allowed variable modifications.
Referenced by ProteinIdentification::SearchParameters::operator==().
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:33 using doxygen 1.8.5 |