Base class for all Caap evaluation algorithms. More...
#include <OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithm.h>
 
  
 | Public Member Functions | |
| MapAlignmentEvaluationAlgorithm () | |
| Default constructor.  More... | |
| virtual | ~MapAlignmentEvaluationAlgorithm () | 
| Destructor.  More... | |
| virtual void | evaluate (const ConsensusMap &conensus_map_in, const ConsensusMap &consensus_map_gt, const DoubleReal &rt_dev, const DoubleReal &mz_dev, const Peak2D::IntensityType &int_dev, const bool use_charge, DoubleReal &out)=0 | 
| Applies the algorithm. The input consensus map is compared to the ground truth.  More... | |
| bool | isSameHandle (const FeatureHandle &lhs, const FeatureHandle &rhs, const DoubleReal &rt_dev, const DoubleReal &mz_dev, const Peak2D::IntensityType &int_dev, const bool use_charge) | 
| Decides if two features are the same, based on maximum allowed deviations for retention time, m/z and intensity.  More... | |
| Static Public Member Functions | |
| static void | registerChildren () | 
| Register all derived classes in this method.  More... | |
| Protected Types | |
| typedef ConsensusFeature::HandleSetType::const_iterator | HandleIterator | 
| Private Member Functions | |
| MapAlignmentEvaluationAlgorithm (const MapAlignmentEvaluationAlgorithm &) | |
| Copy constructor is not implemented -> private.  More... | |
| MapAlignmentEvaluationAlgorithm & | operator= (const MapAlignmentEvaluationAlgorithm &) | 
| Assignment operator is not implemented -> private.  More... | |
Base class for all Caap evaluation algorithms.
These algorithms evaluates alignment results against a ground truth.
| 
 | protected | 
Default constructor.
| 
 | virtual | 
Destructor.
| 
 | private | 
Copy constructor is not implemented -> private.
| 
 | pure virtual | 
Applies the algorithm. The input consensus map is compared to the ground truth.
Implemented in MapAlignmentEvaluationAlgorithmPrecision, and MapAlignmentEvaluationAlgorithmRecall.
| bool isSameHandle | ( | const FeatureHandle & | lhs, | 
| const FeatureHandle & | rhs, | ||
| const DoubleReal & | rt_dev, | ||
| const DoubleReal & | mz_dev, | ||
| const Peak2D::IntensityType & | int_dev, | ||
| const bool | use_charge | ||
| ) | 
Decides if two features are the same, based on maximum allowed deviations for retention time, m/z and intensity.
| 
 | private | 
Assignment operator is not implemented -> private.
| 
 | static | 
Register all derived classes in this method.
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:26 using doxygen 1.8.5 |