Ripping protein/peptide identification according their file origin. More...
#include <OpenMS/ANALYSIS/ID/IDRipper.h>
 
  
 | Public Member Functions | |
| IDRipper () | |
| Default constructor.  More... | |
| virtual | ~IDRipper () | 
| Desctructor.  More... | |
| void | rip (std::map< String, std::pair< std::vector< ProteinIdentification >, std::vector< PeptideIdentification > > > &ripped, std::vector< ProteinIdentification > &proteins, std::vector< PeptideIdentification > &peptides) | 
| Ripping protein/peptide identification according their file origin.  More... | |
|  Public Member Functions inherited from DefaultParamHandler | |
| DefaultParamHandler (const String &name) | |
| Constructor with name that is displayed in error messages.  More... | |
| DefaultParamHandler (const DefaultParamHandler &rhs) | |
| Copy constructor.  More... | |
| virtual | ~DefaultParamHandler () | 
| Destructor.  More... | |
| virtual DefaultParamHandler & | operator= (const DefaultParamHandler &rhs) | 
| Assignment operator.  More... | |
| virtual bool | operator== (const DefaultParamHandler &rhs) const | 
| Equality operator.  More... | |
| void | setParameters (const Param ¶m) | 
| Sets the parameters.  More... | |
| const Param & | getParameters () const | 
| Non-mutable access to the parameters.  More... | |
| const Param & | getDefaults () const | 
| Non-mutable access to the default parameters.  More... | |
| const String & | getName () const | 
| Non-mutable access to the name.  More... | |
| void | setName (const String &name) | 
| Mutable access to the name.  More... | |
| const std::vector< String > & | getSubsections () const | 
| Non-mutable access to the registered subsections.  More... | |
| Private Member Functions | |
| IDRipper (const IDRipper &rhs) | |
| Copy constructor.  More... | |
| IDRipper & | operator= (const IDRipper &rhs) | 
| Assignment.  More... | |
| void | getProteinHits_ (std::vector< ProteinHit > &result, const std::vector< ProteinHit > &protein_hits, const std::vector< String > &protein_accessions) | 
| helper function, extracts all protein hits that match the protein accession  More... | |
| void | getProteinAccessions_ (std::vector< String > &result, const std::vector< PeptideHit > &peptide_hits) | 
| helper function, returns the string representation of the peptide hit accession  More... | |
| void | getProteinIdentification_ (ProteinIdentification &result, PeptideIdentification pep_ident, std::vector< ProteinIdentification > &prot_idents) | 
| helper function, returns the protein identification for the given peptide identification based on the same identifier  More... | |
| Additional Inherited Members | |
|  Protected Member Functions inherited from DefaultParamHandler | |
| virtual void | updateMembers_ () | 
| This method is used to update extra member variables at the end of the setParameters() method.  More... | |
| void | defaultsToParam_ () | 
| Updates the parameters after the defaults have been set in the constructor.  More... | |
|  Protected Attributes inherited from DefaultParamHandler | |
| Param | param_ | 
| Container for current parameters.  More... | |
| Param | defaults_ | 
| Container for default parameters. This member should be filled in the constructor of derived classes!  More... | |
| std::vector< String > | subsections_ | 
| Container for registered subsections. This member should be filled in the constructor of derived classes!  More... | |
| String | error_name_ | 
| Name that is displayed in error messages during the parameter checking.  More... | |
| bool | check_defaults_ | 
| If this member is set to false no checking if parameters in done;.  More... | |
| bool | warn_empty_defaults_ | 
| If this member is set to false no warning is emitted when defaults are empty;.  More... | |
Ripping protein/peptide identification according their file origin.
Helper class, which is used by ProteinQuantifier. See there for further documentation.
| IDRipper | ( | ) | 
Default constructor.
| 
 | virtual | 
Desctructor.
| 
 | private | 
helper function, returns the string representation of the peptide hit accession
| 
 | private | 
helper function, extracts all protein hits that match the protein accession
| 
 | private | 
helper function, returns the protein identification for the given peptide identification based on the same identifier
| void rip | ( | std::map< String, std::pair< std::vector< ProteinIdentification >, std::vector< PeptideIdentification > > > & | ripped, | 
| std::vector< ProteinIdentification > & | proteins, | ||
| std::vector< PeptideIdentification > & | peptides | ||
| ) | 
Ripping protein/peptide identification according their file origin.
Iteration over all PeptideIdentification. For each annotated file origin create a map entry and store the respective PeptideIdentification and ProteinIdentification.
| ripped | Contains the protein identification and peptide identification for each file origin annotated in proteins and peptides | 
| proteins | Peptide identification annotated with file origin | 
| peptides | Protein identification | 
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:26 using doxygen 1.8.5 |