ComplementMarker marks peak pairs which could represent y - b ion pairs. More...
#include <OpenMS/FILTERING/TRANSFORMERS/ComplementMarker.h>
 
  
 | Public Member Functions | |
| ComplementMarker () | |
| standard constructor  More... | |
| ComplementMarker (const ComplementMarker &source) | |
| copy constructor  More... | |
| virtual | ~ComplementMarker () | 
| destructor  More... | |
| ComplementMarker & | operator= (const ComplementMarker &source) | 
| assignment operator  More... | |
|  Public Member Functions inherited from PeakMarker | |
| PeakMarker () | |
| default constructor  More... | |
| PeakMarker (const PeakMarker &source) | |
| copy constructor  More... | |
| virtual | ~PeakMarker () | 
| destructor  More... | |
| PeakMarker & | operator= (const PeakMarker &source) | 
| assignment operator  More... | |
| template<typename SpectrumType > | |
| void | apply (std::map< double, bool > &, SpectrumType &) | 
| method to mark peaks  More... | |
|  Public Member Functions inherited from DefaultParamHandler | |
| DefaultParamHandler (const String &name) | |
| Constructor with name that is displayed in error messages.  More... | |
| DefaultParamHandler (const DefaultParamHandler &rhs) | |
| Copy constructor.  More... | |
| virtual | ~DefaultParamHandler () | 
| Destructor.  More... | |
| virtual DefaultParamHandler & | operator= (const DefaultParamHandler &rhs) | 
| Assignment operator.  More... | |
| virtual bool | operator== (const DefaultParamHandler &rhs) const | 
| Equality operator.  More... | |
| void | setParameters (const Param ¶m) | 
| Sets the parameters.  More... | |
| const Param & | getParameters () const | 
| Non-mutable access to the parameters.  More... | |
| const Param & | getDefaults () const | 
| Non-mutable access to the default parameters.  More... | |
| const String & | getName () const | 
| Non-mutable access to the name.  More... | |
| void | setName (const String &name) | 
| Mutable access to the name.  More... | |
| const std::vector< String > & | getSubsections () const | 
| Non-mutable access to the registered subsections.  More... | |
| template<typename SpectrumType > | |
| void | apply (std::map< double, bool > marked, SpectrumType &spectrum) | 
| static PeakMarker * | create () | 
| static const String | getProductName () | 
| returns the name to register at the factory  More... | |
| Additional Inherited Members | |
|  Static Public Member Functions inherited from PeakMarker | |
| static const String | getProductName () | 
|  Protected Member Functions inherited from DefaultParamHandler | |
| virtual void | updateMembers_ () | 
| This method is used to update extra member variables at the end of the setParameters() method.  More... | |
| void | defaultsToParam_ () | 
| Updates the parameters after the defaults have been set in the constructor.  More... | |
|  Protected Attributes inherited from DefaultParamHandler | |
| Param | param_ | 
| Container for current parameters.  More... | |
| Param | defaults_ | 
| Container for default parameters. This member should be filled in the constructor of derived classes!  More... | |
| std::vector< String > | subsections_ | 
| Container for registered subsections. This member should be filled in the constructor of derived classes!  More... | |
| String | error_name_ | 
| Name that is displayed in error messages during the parameter checking.  More... | |
| bool | check_defaults_ | 
| If this member is set to false no checking if parameters in done;.  More... | |
| bool | warn_empty_defaults_ | 
| If this member is set to false no warning is emitted when defaults are empty;.  More... | |
ComplementMarker marks peak pairs which could represent y - b ion pairs.
Parameters of this class are:| Name | Type | Default | Restrictions | Description | 
|---|---|---|---|---|
| tolerance | float | 1 | Tolerance value as defined by Bern et al. | |
| marks | int | 1 | How often a peak needs to be marked to be returned | 
| ComplementMarker | ( | ) | 
standard constructor
| ComplementMarker | ( | const ComplementMarker & | source | ) | 
copy constructor
| 
 | virtual | 
destructor
| 
 | inline | 
| 
 | inlinestatic | 
| 
 | inlinestatic | 
returns the name to register at the factory
| ComplementMarker& operator= | ( | const ComplementMarker & | source | ) | 
assignment operator
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:30 using doxygen 1.8.5 |