Aligns the peaks of two spectra. More...
#include <OpenMS/COMPARISON/SPECTRA/SpectrumAlignment.h>
 
  
 | Public Member Functions | |
| template<typename SpectrumType > | |
| void | getSpectrumAlignment (std::vector< std::pair< Size, Size > > &alignment, const SpectrumType &s1, const SpectrumType &s2) const | 
| SpectrumAlignment () | |
| default constructor  More... | |
| SpectrumAlignment (const SpectrumAlignment &source) | |
| copy constructor  More... | |
| virtual | ~SpectrumAlignment () | 
| destructor  More... | |
| SpectrumAlignment & | operator= (const SpectrumAlignment &source) | 
| assignment operator  More... | |
|  Public Member Functions inherited from DefaultParamHandler | |
| DefaultParamHandler (const String &name) | |
| Constructor with name that is displayed in error messages.  More... | |
| DefaultParamHandler (const DefaultParamHandler &rhs) | |
| Copy constructor.  More... | |
| virtual | ~DefaultParamHandler () | 
| Destructor.  More... | |
| virtual DefaultParamHandler & | operator= (const DefaultParamHandler &rhs) | 
| Assignment operator.  More... | |
| virtual bool | operator== (const DefaultParamHandler &rhs) const | 
| Equality operator.  More... | |
| void | setParameters (const Param ¶m) | 
| Sets the parameters.  More... | |
| const Param & | getParameters () const | 
| Non-mutable access to the parameters.  More... | |
| const Param & | getDefaults () const | 
| Non-mutable access to the default parameters.  More... | |
| const String & | getName () const | 
| Non-mutable access to the name.  More... | |
| void | setName (const String &name) | 
| Mutable access to the name.  More... | |
| const std::vector< String > & | getSubsections () const | 
| Non-mutable access to the registered subsections.  More... | |
| Additional Inherited Members | |
|  Protected Member Functions inherited from DefaultParamHandler | |
| virtual void | updateMembers_ () | 
| This method is used to update extra member variables at the end of the setParameters() method.  More... | |
| void | defaultsToParam_ () | 
| Updates the parameters after the defaults have been set in the constructor.  More... | |
|  Protected Attributes inherited from DefaultParamHandler | |
| Param | param_ | 
| Container for current parameters.  More... | |
| Param | defaults_ | 
| Container for default parameters. This member should be filled in the constructor of derived classes!  More... | |
| std::vector< String > | subsections_ | 
| Container for registered subsections. This member should be filled in the constructor of derived classes!  More... | |
| String | error_name_ | 
| Name that is displayed in error messages during the parameter checking.  More... | |
| bool | check_defaults_ | 
| If this member is set to false no checking if parameters in done;.  More... | |
| bool | warn_empty_defaults_ | 
| If this member is set to false no warning is emitted when defaults are empty;.  More... | |
Aligns the peaks of two spectra.
Using a banded (width via 'tolerance' parameter) alignment. Scoring function is the m/z distance between peaks. Intensity does not play a role!
Parameters of this class are:| Name | Type | Default | Restrictions | Description | 
|---|---|---|---|---|
| tolerance | float | 0.3 | Defines the absolute (in Da) or relative (in ppm) tolerance | |
| is_relative_tolerance | string | false | true, false | If true, the 'tolerance' is interpreted as ppm-value | 
default constructor
| SpectrumAlignment | ( | const SpectrumAlignment & | source | ) | 
copy constructor
| 
 | virtual | 
destructor
| 
 | inline | 
Referenced by SpectraMerger::mergeSpectra_().
| SpectrumAlignment& operator= | ( | const SpectrumAlignment & | source | ) | 
assignment operator
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:28 using doxygen 1.8.5 |