#include <OpenMS/METADATA/MSQuantifications.h>
 
  
 | Classes | |
| struct | AnalysisSummary | 
| struct | Assay | 
| Public Member Functions | |
| MSQuantifications () | |
| Constructor.  More... | |
| ~MSQuantifications () | |
| Destructor.  More... | |
| MSQuantifications (const MSQuantifications &source) | |
| Copy constructor.  More... | |
| MSQuantifications & | operator= (const MSQuantifications &source) | 
| Assignment operator.  More... | |
| bool | operator== (const MSQuantifications &rhs) const | 
| Equality operator.  More... | |
| bool | operator!= (const MSQuantifications &rhs) const | 
| Equality operator.  More... | |
| const std::vector< DataProcessing > | getDataProcessingList () const | 
| Loads data from a text file.  More... | |
| const std::vector< Assay > & | getAssays () const | 
| std::vector< Assay > & | getAssays () | 
| const std::vector< ConsensusMap > & | getConsensusMaps () const | 
| std::vector< ConsensusMap > & | getConsensusMaps () | 
| void | setConsensusMaps (const std::vector< ConsensusMap > &) | 
| const std::vector< FeatureMap<> > & | getFeatureMaps () const | 
| const AnalysisSummary & | getAnalysisSummary () const | 
| AnalysisSummary & | getAnalysisSummary () | 
| void | setDataProcessingList (std::vector< DataProcessing > &dpl) | 
| void | setAnalysisSummaryQuantType (QUANT_TYPES r) | 
| void | addConsensusMap (ConsensusMap &m) | 
| void | assignUIDs () | 
| void | registerExperiment (MSExperiment< Peak1D > &exp, std::vector< std::vector< std::pair< String, DoubleReal > > > labels) | 
|  Public Member Functions inherited from ExperimentalSettings | |
| ExperimentalSettings () | |
| Constructor.  More... | |
| ExperimentalSettings (const ExperimentalSettings &source) | |
| Copy constructor.  More... | |
| ~ExperimentalSettings () | |
| Destructor.  More... | |
| ExperimentalSettings & | operator= (const ExperimentalSettings &source) | 
| Assignment operator.  More... | |
| bool | operator== (const ExperimentalSettings &rhs) const | 
| Equality operator.  More... | |
| bool | operator!= (const ExperimentalSettings &rhs) const | 
| Equality operator.  More... | |
| const Sample & | getSample () const | 
| returns a const reference to the sample description  More... | |
| Sample & | getSample () | 
| returns a mutable reference to the sample description  More... | |
| void | setSample (const Sample &sample) | 
| sets the sample description  More... | |
| const std::vector< SourceFile > & | getSourceFiles () const | 
| returns a const reference to the source data file  More... | |
| std::vector< SourceFile > & | getSourceFiles () | 
| returns a mutable reference to the source data file  More... | |
| void | setSourceFiles (const std::vector< SourceFile > &source_files) | 
| sets the source data file  More... | |
| const std::vector < ContactPerson > & | getContacts () const | 
| returns a const reference to the list of contact persons  More... | |
| std::vector< ContactPerson > & | getContacts () | 
| returns a mutable reference to the list of contact persons  More... | |
| void | setContacts (const std::vector< ContactPerson > &contacts) | 
| sets the list of contact persons  More... | |
| const Instrument & | getInstrument () const | 
| returns a const reference to the MS instrument description  More... | |
| Instrument & | getInstrument () | 
| returns a mutable reference to the MS instrument description  More... | |
| void | setInstrument (const Instrument &instrument) | 
| sets the MS instrument description  More... | |
| const HPLC & | getHPLC () const | 
| returns a const reference to the description of the HPLC run  More... | |
| HPLC & | getHPLC () | 
| returns a mutable reference to the description of the HPLC run  More... | |
| void | setHPLC (const HPLC &hplc) | 
| sets the description of the HPLC run  More... | |
| const DateTime & | getDateTime () const | 
| returns the date the experiment was performed  More... | |
| void | setDateTime (const DateTime &date) | 
| sets the date the experiment was performed  More... | |
| const String & | getComment () const | 
| returns the free-text comment  More... | |
| void | setComment (const String &comment) | 
| sets the free-text comment  More... | |
| const std::vector < ProteinIdentification > & | getProteinIdentifications () const | 
| returns a const reference to the protein ProteinIdentification vector  More... | |
| std::vector < ProteinIdentification > & | getProteinIdentifications () | 
| returns a mutable reference to the protein ProteinIdentification vector  More... | |
| void | setProteinIdentifications (const std::vector< ProteinIdentification > &protein_identifications) | 
| sets the protein ProteinIdentification vector  More... | |
| const String & | getFractionIdentifier () const | 
| returns fraction identifier  More... | |
| void | setFractionIdentifier (const String &fraction_identifier) | 
| sets the fraction identifier  More... | |
|  Public Member Functions inherited from MetaInfoInterface | |
| MetaInfoInterface () | |
| constructor  More... | |
| MetaInfoInterface (const MetaInfoInterface &rhs) | |
| copy constructor  More... | |
| ~MetaInfoInterface () | |
| destructor  More... | |
| MetaInfoInterface & | operator= (const MetaInfoInterface &rhs) | 
| assignment operator  More... | |
| bool | operator== (const MetaInfoInterface &rhs) const | 
| Equality operator.  More... | |
| bool | operator!= (const MetaInfoInterface &rhs) const | 
| Equality operator.  More... | |
| const DataValue & | getMetaValue (const String &name) const | 
| returns the value corresponding to a string  More... | |
| const DataValue & | getMetaValue (UInt index) const | 
| returns the value corresponding to an index  More... | |
| bool | metaValueExists (const String &name) const | 
| returns if this MetaInfo is set  More... | |
| bool | metaValueExists (UInt index) const | 
| returns if this MetaInfo is set  More... | |
| void | setMetaValue (const String &name, const DataValue &value) | 
| sets the DataValue corresponding to a name  More... | |
| void | setMetaValue (UInt index, const DataValue &value) | 
| sets the DataValue corresponding to an index  More... | |
| void | removeMetaValue (const String &name) | 
| Removes the DataValue corresponding to nameif it exists.  More... | |
| void | removeMetaValue (UInt index) | 
| Removes the DataValue corresponding to indexif it exists.  More... | |
| void | getKeys (std::vector< String > &keys) const | 
| fills the given vector with a list of all keys for which a value is set  More... | |
| void | getKeys (std::vector< UInt > &keys) const | 
| fills the given vector with a list of all keys for which a value is set  More... | |
| bool | isMetaEmpty () const | 
| returns if the MetaInfo is empty  More... | |
| void | clearMetaInfo () | 
| removes all meta values  More... | |
|  Public Member Functions inherited from DocumentIdentifier | |
| DocumentIdentifier () | |
| default constructor  More... | |
| DocumentIdentifier (const DocumentIdentifier &source) | |
| Copy constructor.  More... | |
| DocumentIdentifier & | operator= (const DocumentIdentifier &source) | 
| Assignment operator.  More... | |
| bool | operator== (const DocumentIdentifier &rhs) const | 
| Equality operator.  More... | |
| virtual | ~DocumentIdentifier () | 
| destructor  More... | |
| void | setIdentifier (const String &id) | 
| set document identifier (e.g. an LSID)  More... | |
| const String & | getIdentifier () const | 
| retrieve document identifier (e.g. an LSID)  More... | |
| void | swap (DocumentIdentifier &from) | 
| exchange content with fromMore... | |
| void | setLoadedFilePath (const String &file_name) | 
| set the file_name_ according to absolute path of the file loaded from preferably done whilst loading  More... | |
| const String & | getLoadedFilePath () const | 
| get the file_name_ which is the absolute path to the file loaded from  More... | |
| void | setLoadedFileType (const String &file_name) | 
| set the file_type according to the type of the file loaded from (see FileHandler::Type) preferably done whilst loading  More... | |
| const FileTypes::Type & | getLoadedFileType () const | 
| get the file_type (e.g. featureXML, consensusXML, mzData, mzXML, mzML, ...) of the file loaded from  More... | |
| Private Attributes | |
| AnalysisSummary | analysis_summary_ | 
| std::vector< MetaInfo > | bibliographic_reference_ | 
| std::vector< ConsensusMap > | consensus_maps_ | 
| std::vector< FeatureMap<> > | feature_maps_ | 
| std::vector< Assay > | assays_ | 
| std::vector< DataProcessing > | data_processings_ | 
| Base type definitions | |
| enum | QUANT_TYPES { MS1LABEL = 0, MS2LABEL, LABELFREE, SIZE_OF_QUANT_TYPES } | 
| typedef CVTermList | ParamGroupList | 
| typedef docu  More... | |
| static const std::string | NamesOfQuantTypes [SIZE_OF_QUANT_TYPES] | 
| Additional Inherited Members | |
|  Static Public Member Functions inherited from MetaInfoInterface | |
| static MetaInfoRegistry & | metaRegistry () | 
| retuns a reference to the MetaInfoRegistry  More... | |
|  Protected Member Functions inherited from MetaInfoInterface | |
| void | createIfNotExists_ () | 
| creates the MetaInfo object if it does not exist  More... | |
|  Protected Attributes inherited from ExperimentalSettings | |
| Sample | sample_ | 
| std::vector< SourceFile > | source_files_ | 
| std::vector< ContactPerson > | contacts_ | 
| Instrument | instrument_ | 
| HPLC | hplc_ | 
| DateTime | datetime_ | 
| String | comment_ | 
| std::vector < ProteinIdentification > | protein_identifications_ | 
| String | fraction_identifier_ | 
|  Protected Attributes inherited from MetaInfoInterface | |
| MetaInfo * | meta_ | 
| pointer to the MetaInfo object. 0 by default  More... | |
|  Protected Attributes inherited from DocumentIdentifier | |
| String | id_ | 
| the ID (e.g. LSID)  More... | |
| String | file_path_ | 
| the path to the loaded file  More... | |
| FileTypes::Type | file_type_ | 
| the type of the loaded file  More... | |
| typedef CVTermList ParamGroupList | 
typedef docu
| enum QUANT_TYPES | 
Constructor.
| ~MSQuantifications | ( | ) | 
Destructor.
| MSQuantifications | ( | const MSQuantifications & | source | ) | 
Copy constructor.
| void addConsensusMap | ( | ConsensusMap & | m | ) | 
| void assignUIDs | ( | ) | 
| const AnalysisSummary& getAnalysisSummary | ( | ) | const | 
| AnalysisSummary& getAnalysisSummary | ( | ) | 
| const std::vector<Assay>& getAssays | ( | ) | const | 
| std::vector<Assay>& getAssays | ( | ) | 
| const std::vector<ConsensusMap>& getConsensusMaps | ( | ) | const | 
| std::vector<ConsensusMap>& getConsensusMaps | ( | ) | 
| const std::vector<DataProcessing> getDataProcessingList | ( | ) | const | 
Loads data from a text file.
| filename | The input file name. | 
| trim_lines | Whether or not the lines are trimmed when reading them from file. | 
| first_n | If set, only first_nlines the lines from the beginning of the file are read. | 
| Exception::FileNotFound | is thrown if the file could not be opened. | 
TODO : implement
| const std::vector<FeatureMap<> >& getFeatureMaps | ( | ) | const | 
| bool operator!= | ( | const MSQuantifications & | rhs | ) | const | 
Equality operator.
| MSQuantifications& operator= | ( | const MSQuantifications & | source | ) | 
Assignment operator.
| bool operator== | ( | const MSQuantifications & | rhs | ) | const | 
Equality operator.
| void registerExperiment | ( | MSExperiment< Peak1D > & | exp, | 
| std::vector< std::vector< std::pair< String, DoubleReal > > > | labels | ||
| ) | 
| void setAnalysisSummaryQuantType | ( | QUANT_TYPES | r | ) | 
| void setConsensusMaps | ( | const std::vector< ConsensusMap > & | ) | 
| void setDataProcessingList | ( | std::vector< DataProcessing > & | dpl | ) | 
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| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:33 using doxygen 1.8.5 |