| begin_ | ProgressLogger | mutableprotected | 
  | boundary_ | MascotInfile | protected | 
  | charges_ | MascotInfile | protected | 
  | cleavage_ | MascotInfile | protected | 
  | CMD enum value | ProgressLogger |  | 
  | db_ | MascotInfile | protected | 
  | dlg_ | ProgressLogger | mutableprotected | 
  | end_ | ProgressLogger | mutableprotected | 
  | endProgress() const | ProgressLogger |  | 
  | form_version_ | MascotInfile | protected | 
  | getBoundary() | MascotInfile |  | 
  | getCharges() | MascotInfile |  | 
  | getCleavage() | MascotInfile |  | 
  | getDB() | MascotInfile |  | 
  | getFormVersion() | MascotInfile |  | 
  | getHits() | MascotInfile |  | 
  | getInstrument() | MascotInfile |  | 
  | getLogType() const | ProgressLogger |  | 
  | getMassType() | MascotInfile |  | 
  | getMissedCleavages() | MascotInfile |  | 
  | getModifications() | MascotInfile |  | 
  | getNextSpectrum_(std::istream &is, std::vector< std::pair< double, double > > &spectrum, UInt &charge, double &precursor_mz, double &precursor_int, double &rt, String &title) | MascotInfile | protected | 
  | getPeakMassTolerance() | MascotInfile |  | 
  | getPrecursorMassTolerance() | MascotInfile |  | 
  | getSearchType() | MascotInfile |  | 
  | getTaxonomy() | MascotInfile |  | 
  | getVariableModifications() | MascotInfile |  | 
  | GUI enum value | ProgressLogger |  | 
  | hits_ | MascotInfile | protected | 
  | instrument_ | MascotInfile | protected | 
  | ion_mass_tolerance_ | MascotInfile | protected | 
  | last_invoke_ | ProgressLogger | mutableprotected | 
  | load(const String &filename, MapType &exp) | MascotInfile | inline | 
  | LogType enum name | ProgressLogger |  | 
  | MascotInfile() | MascotInfile |  | 
  | mass_type_ | MascotInfile | protected | 
  | missed_cleavages_ | MascotInfile | protected | 
  | mods_ | MascotInfile | protected | 
  | mz_ | MascotInfile | protected | 
  | NONE enum value | ProgressLogger |  | 
  | precursor_mass_tolerance_ | MascotInfile | protected | 
  | ProgressLogger() | ProgressLogger |  | 
  | recursion_depth_ | ProgressLogger | protectedstatic | 
  | retention_time_ | MascotInfile | protected | 
  | search_title_ | MascotInfile | protected | 
  | search_type_ | MascotInfile | protected | 
  | setBoundary(const String &boundary) | MascotInfile |  | 
  | setCharges(std::vector< Int > &charges) | MascotInfile |  | 
  | setCleavage(const String &cleavage) | MascotInfile |  | 
  | setDB(const String &db) | MascotInfile |  | 
  | setFormVersion(const String &form_version) | MascotInfile |  | 
  | setHits(const String &hits) | MascotInfile |  | 
  | setInstrument(const String &instrument) | MascotInfile |  | 
  | setLogType(LogType type) const | ProgressLogger |  | 
  | setMassType(const String &mass_type) | MascotInfile |  | 
  | setMissedCleavages(UInt missed_cleavages) | MascotInfile |  | 
  | setModifications(const std::vector< String > &mods) | MascotInfile |  | 
  | setPeakMassTolerance(Real ion_mass_tolerance) | MascotInfile |  | 
  | setPrecursorMassTolerance(Real precursor_mass_tolerance) | MascotInfile |  | 
  | setProgress(SignedSize value) const | ProgressLogger |  | 
  | setSearchType(const String &search_type) | MascotInfile |  | 
  | setTaxonomy(const String &taxonomy) | MascotInfile |  | 
  | setVariableModifications(const std::vector< String > &mods) | MascotInfile |  | 
  | startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger |  | 
  | stop_watch_ | ProgressLogger | mutableprotected | 
  | store(const String &filename, const PeakSpectrum &spec, DoubleReal mz, DoubleReal retention_time, String search_title) | MascotInfile |  | 
  | store(const String &filename, const MSExperiment<> &experiment, String search_title) | MascotInfile |  | 
  | taxonomy_ | MascotInfile | protected | 
  | type_ | ProgressLogger | mutableprotected | 
  | value_ | ProgressLogger | mutableprotected | 
  | variable_mods_ | MascotInfile | protected | 
  | writeHeader_(FILE *fp) | MascotInfile | protected | 
  | writeMSExperiment_(FILE *fp, const String &filename, const MSExperiment<> &experiment) | MascotInfile | protected | 
  | writeParameterHeader_(const String &name, FILE *fp, bool line_break=true) | MascotInfile | protected | 
  | writeSpectrum_(FILE *fp, const String &filename, const PeakSpectrum &peaks) | MascotInfile | protected | 
  | ~MascotInfile() | MascotInfile | virtual | 
  | ~ProgressLogger() | ProgressLogger |  |