| abortTOPPTool() | TOPPViewBase | protectedslot | 
  | activate1DSpectrum(int index) | TOPPViewBase | slot | 
  | activate1DSpectrum(std::vector< int, std::allocator< int > > indices) | TOPPViewBase | slot | 
  | add_2d_context_ | TOPPViewBase | protected | 
  | addData(FeatureMapSharedPtrType feature_map, ConsensusMapSharedPtrType consensus_map, std::vector< PeptideIdentification > &peptides, ExperimentSharedPtrType peak_map, LayerData::DataType data_type, bool show_as_1d, bool show_options, bool as_new_window=true, const String &filename="", const String &caption="", UInt window_id=0, Size spectrum_id=0) | TOPPViewBase |  | 
  | addDataDB(UInt db_id, bool show_options, String caption="", UInt window_id=0) | TOPPViewBase |  | 
  | addDataFile(const String &filename, bool show_options, bool add_to_recent, String caption="", UInt window_id=0, Size spectrum_id=0) | TOPPViewBase |  | 
  | addRecentFile_(const String &filename) | TOPPViewBase | protected | 
  | annotateWithID() | TOPPViewBase | slot | 
  | CAPTION_3D_SUFFIX_ | TOPPViewBase | privatestatic | 
  | changeLabel(QAction *) | TOPPViewBase | slot | 
  | changeLayerFlag(bool) | TOPPViewBase | slot | 
  | changeUnassigned(QAction *) | TOPPViewBase | slot | 
  | check_defaults_ | DefaultParamHandler | protected | 
  | checkPreferences_() | TOPPViewBase | protected | 
  | closeByTab(int id) | TOPPViewBase | protectedslot | 
  | closeEvent(QCloseEvent *event) | TOPPViewBase | protected | 
  | closeFile() | TOPPViewBase | slot | 
  | connectToDB_(DBConnection &db) | TOPPViewBase | protected | 
  | ConsensusMapSharedPtrType typedef | TOPPViewBase |  | 
  | ConsensusMapType typedef | TOPPViewBase |  | 
  | containsMS1Scans(const ExperimentType &exp) | TOPPViewBase | static | 
  | copyLayer(const QMimeData *data, QWidget *source, int id=-1) | TOPPViewBase | protectedslot | 
  | countMS1Zeros(const ExperimentType &exp) | TOPPViewBase | static | 
  | current_path_ | TOPPViewBase | protected | 
  | deactivate1DSpectrum(int index) | TOPPViewBase | slot | 
  | DefaultParamHandler(const String &name) | DefaultParamHandler |  | 
  | DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |  | 
  | defaults_ | DefaultParamHandler | protected | 
  | defaultsToParam_() | DefaultParamHandler | protected | 
  | dm_elements_2d_ | TOPPViewBase | protected | 
  | dm_hull_2d_ | TOPPViewBase | protected | 
  | dm_hulls_2d_ | TOPPViewBase | protected | 
  | dm_ident_2d_ | TOPPViewBase | protected | 
  | dm_label_2d_ | TOPPViewBase | protected | 
  | dm_precursors_2d_ | TOPPViewBase | protected | 
  | dm_unassigned_2d_ | TOPPViewBase | protected | 
  | draw_group_1d_ | TOPPViewBase | protected | 
  | editMetadata() | TOPPViewBase | slot | 
  | enhancedWorkspaceWindowChanged(int id) | TOPPViewBase | protectedslot | 
  | error_name_ | DefaultParamHandler | protected | 
  | estimateNoiseFromRandomMS1Scans(const ExperimentType &exp, UInt n_scans=10) | TOPPViewBase |  | 
  | ExperimentSharedPtrType typedef | TOPPViewBase |  | 
  | ExperimentType typedef | TOPPViewBase |  | 
  | FeatureMapSharedPtrType typedef | TOPPViewBase |  | 
  | FeatureMapType typedef | TOPPViewBase |  | 
  | file_name | TOPPViewBase |  | 
  | fileChanged_(const String &) | TOPPViewBase | protectedslot | 
  | filter_dock_widget_ | TOPPViewBase | protected | 
  | filterContextMenu(const QPoint &pos) | TOPPViewBase | protectedslot | 
  | filterEdit(QListWidgetItem *item) | TOPPViewBase | protectedslot | 
  | filters_ | TOPPViewBase | protected | 
  | filters_check_box_ | TOPPViewBase | protected | 
  | finishTOPPToolExecution(int exitCode, QProcess::ExitStatus exitStatus) | TOPPViewBase | protectedslot | 
  | getActive1DWidget() const | TOPPViewBase |  | 
  | getActive2DWidget() const | TOPPViewBase |  | 
  | getActive3DWidget() const | TOPPViewBase |  | 
  | getActiveCanvas() const | TOPPViewBase |  | 
  | getActiveSpectrumWidget() const | TOPPViewBase |  | 
  | getCurrentLayer() const | TOPPViewBase |  | 
  | getDefaults() const | DefaultParamHandler |  | 
  | getFileList_(const String &path_overwrite="") | TOPPViewBase | protected | 
  | getFilenamesOfOpenFiles_() | TOPPViewBase | protected | 
  | getName() const | DefaultParamHandler |  | 
  | getParameters() const | DefaultParamHandler |  | 
  | getSpectraIdentificationViewWidget() | TOPPViewBase |  | 
  | getSpectrumParameters(UInt dim) | TOPPViewBase |  | 
  | getSubsections() const | DefaultParamHandler |  | 
  | getWorkspace() const | TOPPViewBase |  | 
  | group_label_2d_ | TOPPViewBase | protected | 
  | group_unassigned_2d_ | TOPPViewBase | protected | 
  | hasPeptideIdentifications(const ExperimentType &map) | TOPPViewBase | static | 
  | identificationview_behavior_ | TOPPViewBase | protected | 
  | in | TOPPViewBase |  | 
  | initializeDefaultParameters_() | TOPPViewBase | protected | 
  | intensity_button_group_ | TOPPViewBase | protected | 
  | layer_dock_widget_ | TOPPViewBase | protected | 
  | layer_manager_ | TOPPViewBase | protected | 
  | layer_name | TOPPViewBase |  | 
  | layerActivated() | TOPPViewBase | slot | 
  | layerContextMenu(const QPoint &pos) | TOPPViewBase | protectedslot | 
  | layerDeactivated() | TOPPViewBase | slot | 
  | layerEdit(QListWidgetItem *) | TOPPViewBase | protectedslot | 
  | layerFilterVisibilityChange(bool) | TOPPViewBase | protectedslot | 
  | layerSelectionChange(int) | TOPPViewBase | protectedslot | 
  | layerStatistics() | TOPPViewBase | slot | 
  | layerVisibilityChange(QListWidgetItem *item) | TOPPViewBase | protectedslot | 
  | layerZoomChanged() | TOPPViewBase | slot | 
  | linkZoom() | TOPPViewBase | slot | 
  | linkZoom_action_ | TOPPViewBase | protected | 
  | loadFile(QString) | TOPPViewBase | slot | 
  | loadFiles(const StringList &list, QSplashScreen *splash_screen) | TOPPViewBase |  | 
  | loadPreferences(String filename="") | TOPPViewBase |  | 
  | log_ | TOPPViewBase | protected | 
  | logContextMenu(const QPoint &pos) | TOPPViewBase | protectedslot | 
  | LogState enum name | TOPPViewBase | protected | 
  | LS_ERROR enum value | TOPPViewBase | protected | 
  | LS_NOTICE enum value | TOPPViewBase | protected | 
  | LS_WARNING enum value | TOPPViewBase | protected | 
  | message_label_ | TOPPViewBase | protected | 
  | metadataDatabaseDialog() | TOPPViewBase | slot | 
  | metadataFileDialog() | TOPPViewBase | slot | 
  | mz_label_ | TOPPViewBase | protected | 
  | openDatabaseDialog() | TOPPViewBase | slot | 
  | openExampleDialog() | TOPPViewBase | slot | 
  | openFileDialog() | TOPPViewBase | slot | 
  | openRecentFile() | TOPPViewBase | protectedslot | 
  | operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual | 
  | operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual | 
  | out | TOPPViewBase |  | 
  | param | TOPPViewBase |  | 
  | param_ | DefaultParamHandler | protected | 
  | preferencesDialog() | TOPPViewBase | slot | 
  | process | TOPPViewBase |  | 
  | projections_2d_ | TOPPViewBase | protected | 
  | recent_actions_ | TOPPViewBase | protected | 
  | recent_files_ | TOPPViewBase | protected | 
  | rerunTOPPTool() | TOPPViewBase | protectedslot | 
  | resetZoom() | TOPPViewBase | slot | 
  | rt_label_ | TOPPViewBase | protected | 
  | runTOPPTool_() | TOPPViewBase | protected | 
  | saveLayerAll() | TOPPViewBase | slot | 
  | saveLayerVisible() | TOPPViewBase | slot | 
  | savePreferences() | TOPPViewBase |  | 
  | setDrawMode1D(int) | TOPPViewBase | slot | 
  | setIntensityMode(int) | TOPPViewBase | slot | 
  | setName(const String &name) | DefaultParamHandler |  | 
  | setParameters(const Param ¶m) | DefaultParamHandler |  | 
  | showAboutDialog() | TOPPViewBase | slot | 
  | showCurrentPeaksAs2D() | TOPPViewBase | slot | 
  | showCurrentPeaksAs3D() | TOPPViewBase | slot | 
  | showCursorStatus(double mz, double rt) | TOPPViewBase | slot | 
  | showCursorStatusInvert(double mz, double rt) | TOPPViewBase | slot | 
  | showGoToDialog() | TOPPViewBase | slot | 
  | showLogMessage_(LogState state, const String &heading, const String &body) | TOPPViewBase | protected | 
  | showPreferences() | TOPPViewBase | slot | 
  | showSpectrumAlignmentDialog() | TOPPViewBase | slot | 
  | showSpectrumAs1D(int index) | TOPPViewBase | slot | 
  | showSpectrumAs1D(std::vector< int, std::allocator< int > > indices) | TOPPViewBase | slot | 
  | showSpectrumBrowser() | TOPPViewBase | protectedslot | 
  | showSpectrumGenerationDialog() | TOPPViewBase | slot | 
  | showSpectrumMetaData(int spectrum_index) | TOPPViewBase | protectedslot | 
  | showSpectrumWidgetInWindow(SpectrumWidget *sw, const String &caption) | TOPPViewBase |  | 
  | showStatusMessage(std::string msg, OpenMS::UInt time) | TOPPViewBase | slot | 
  | showTOPPDialog() | TOPPViewBase | slot | 
  | showTOPPDialog_(bool visible) | TOPPViewBase | protected | 
  | showURL() | TOPPViewBase | slot | 
  | spectra_identification_view_widget_ | TOPPViewBase | protected | 
  | spectra_view_widget_ | TOPPViewBase | protected | 
  | spectraview_behavior_ | TOPPViewBase | protected | 
  | spectrum_id | TOPPViewBase |  | 
  | SpectrumType typedef | TOPPViewBase |  | 
  | subsections_ | DefaultParamHandler | protected | 
  | tab_bar_ | TOPPViewBase | protected | 
  | TestTOPPView class | TOPPViewBase | friend | 
  | tileHorizontal() | TOPPViewBase | slot | 
  | tileVertical() | TOPPViewBase | slot | 
  | timer | TOPPViewBase |  | 
  | toggleAxisLegends() | TOPPViewBase | slot | 
  | toggleGridLines() | TOPPViewBase | slot | 
  | toggleProjections() | TOPPViewBase | slot | 
  | tool | TOPPViewBase |  | 
  | tool_bar_ | TOPPViewBase | protected | 
  | tool_bar_1d_ | TOPPViewBase | protected | 
  | tool_bar_2d_cons_ | TOPPViewBase | protected | 
  | tool_bar_2d_feat_ | TOPPViewBase | protected | 
  | tool_bar_2d_ident_ | TOPPViewBase | protected | 
  | tool_bar_2d_peak_ | TOPPViewBase | protected | 
  | topp_ | TOPPViewBase | protected | 
  | TOPPViewBase(QWidget *parent=0) | TOPPViewBase |  | 
  | updateCurrentPath() | TOPPViewBase | slot | 
  | updateFilterBar() | TOPPViewBase | slot | 
  | updateLayerBar() | TOPPViewBase | slot | 
  | updateMembers_() | DefaultParamHandler | protectedvirtual | 
  | updateMenu() | TOPPViewBase | slot | 
  | updateProcessLog() | TOPPViewBase | protectedslot | 
  | updateRecentMenu_() | TOPPViewBase | protected | 
  | updateTabBar(QWidget *w) | TOPPViewBase | slot | 
  | updateToolBar() | TOPPViewBase | slot | 
  | updateViewBar() | TOPPViewBase | slot | 
  | view_behavior_ | TOPPViewBase | protected | 
  | viewChanged(int) | TOPPViewBase | slot | 
  | views_dockwidget_ | TOPPViewBase | protected | 
  | views_tabwidget_ | TOPPViewBase | protected | 
  | visible | TOPPViewBase |  | 
  | warn_empty_defaults_ | DefaultParamHandler | protected | 
  | watcher_ | TOPPViewBase | protected | 
  | watcher_msgbox_ | TOPPViewBase | protected | 
  | window_(int id) const | TOPPViewBase | protected | 
  | window_id | TOPPViewBase |  | 
  | ws_ | TOPPViewBase | protected | 
  | zoom_together_ | TOPPViewBase | protected | 
  | ~DefaultParamHandler() | DefaultParamHandler | virtual | 
  | ~TOPPViewBase() | TOPPViewBase |  |