35 #ifndef  OPENMS_ANALYSIS_ID_ASCORE_H 
   36 #define  OPENMS_ANALYSIS_ID_ASCORE_H 
   89     void computeHighestPeptides(std::vector<std::vector<DoubleReal> > & peptide_site_scores, std::vector<ProbablePhosphoSites> & sites, std::vector<std::vector<Size> > & permutations);
 
   91     void compute_site_determining_ions(std::vector<RichPeakSpectrum> & th_spectra, 
ProbablePhosphoSites & candidates, 
Int charge, std::vector<RichPeakSpectrum> & site_determining_ions);
 
   96     DoubleReal peptideScore_(std::vector<DoubleReal> & scores);
 
   99     std::vector<Size> computeTupel_(
AASequence & without_phospho);
 
  101     std::vector<std::vector<Size> > computePermutations_(std::vector<Size> tupel, 
Int number_of_phospho_sites);
 
  106 #endif // OPENMS_ANALYSIS_ID_ASCORE_H 
Implementation of the Ascore For a given peptide sequence and its MS^2 spectrum it is tried to identi...
Definition: AScore.h:62
Size first
Definition: AScore.h:48
Size second
Definition: AScore.h:49
Representation of a peptide/protein sequence. 
Definition: AASequence.h:84
Size peak_depth
Definition: AScore.h:52
Representation of a peptide hit. 
Definition: PeptideHit.h:54
Size seq_1
Definition: AScore.h:50
size_t Size
Size type e.g. used as variable which can hold result of size() 
Definition: Types.h:144
Size seq_2
Definition: AScore.h:51
int Int
Signed integer type. 
Definition: Types.h:100
Size AScore
Definition: AScore.h:53