36 #ifndef OPENMS_ANALYSIS_ID_PILISIDENTIFICATION_H 
   37 #define OPENMS_ANALYSIS_ID_PILISIDENTIFICATION_H 
   49   class PeakSpectrumCompareFunctor;
 
   93     void getIdentifications(
const std::vector<std::map<String, UInt> > & candidates, std::vector<PeptideIdentification> & ids, 
const RichPeakMap & exp);
 
  146     void updateMembers_();
 
RichPeak1D p_
a peaks, just to not instantiate it over and over again 
Definition: PILISIdentification.h:134
A more convenient string class. 
Definition: String.h:56
A 1-dimensional raw data point or peak mith meta information. 
Definition: RichPeak1D.h:52
PILISModel * hmm_model_
returns the sequence database pointer 
Definition: PILISIdentification.h:122
bool own_model_
flag whether the istance has a internal model 
Definition: PILISIdentification.h:143
Map< char, double > aa_weight_
amino acids weights for the simple spectra generator 
Definition: PILISIdentification.h:125
PeakSpectrumCompareFunctor * scorer_
scorer for spectra comparison 
Definition: PILISIdentification.h:131
This class actually implements a complete ProteinIdentification run with PILIS. 
Definition: PILISIdentification.h:61
This class implements the simulation of the spectra from PILIS. 
Definition: PILISModel.h:67
Representation of a mass spectrometry experiment. 
Definition: MSExperiment.h:68
std::vector< RichPeakSpectrum > sim_specs_
Definition: PILISIdentification.h:137
Base class for compare functors of spectra, that return a similiarity value for two spectra...
Definition: PeakSpectrumCompareFunctor.h:53
PeakSpectrumCompareFunctor * pre_scorer_
scorer for pre comparison 
Definition: PILISIdentification.h:128
A base class for all classes handling default parameters. 
Definition: DefaultParamHandler.h:90
bool own_sequence_db_
flag whether the istance has a internal sequence db 
Definition: PILISIdentification.h:140
Represents the peptide hits for a spectrum. 
Definition: PeptideIdentification.h:63