36 #ifndef OPENMS_ANALYSIS_ID_PILISNEUTRALLOSSMODEL_H 
   37 #define OPENMS_ANALYSIS_ID_PILISNEUTRALLOSSMODEL_H 
   65     friend class PILISNeutralLossModelGenerator;
 
   92     void getIons(std::vector<RichPeak1D> & peaks, 
const AASequence & peptide, 
DoubleReal initial_prob);
 
  101     void generateModel();
 
  119     void enableIonStates_(
const AASequence & peptide);
 
  127     void updateMembers_();
 
This class implements the simulation of the spectra from PILIS. 
Definition: PILISNeutralLossModel.h:62
Representation of a peptide/protein sequence. 
Definition: AASequence.h:84
HiddenMarkovModel hmm_precursor_
precursor model used 
Definition: PILISNeutralLossModel.h:122
UInt num_explicit_
Definition: PILISNeutralLossModel.h:125
int evaluate(const gsl_vector *x, void *params, gsl_vector *f, gsl_matrix *J)
Driver function for the evaluation of function and jacobian. 
Hidden Markov Model implementation of PILIS. 
Definition: HiddenMarkovModel.h:134
A base class for all classes handling default parameters. 
Definition: DefaultParamHandler.h:90