| addPeak_(std::vector< PeakShape > &peaks_DC, PeakArea_ &area, double left_width, double right_width, OptimizePeakDeconvolution::Data &data) | PeakPickerCWT | protected | 
  | begin_ | ProgressLogger | mutableprotected | 
  | check_defaults_ | DefaultParamHandler | protected | 
  | CMD enum value | ProgressLogger |  | 
  | ConstPeakIterator typedef | PeakPickerCWT |  | 
  | correlate_(const PeakShape &peak, const PeakArea_ &area, Int direction=0) const | PeakPickerCWT | protected | 
  | deconvolutePeak_(PeakShape &shape, std::vector< PeakShape > &peak_shapes, DoubleReal peak_bound_cwt) | PeakPickerCWT | protected | 
  | deconvolution_ | PeakPickerCWT | protected | 
  | DefaultParamHandler(const String &name) | DefaultParamHandler |  | 
  | DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |  | 
  | defaults_ | DefaultParamHandler | protected | 
  | defaultsToParam_() | DefaultParamHandler | protected | 
  | determineChargeState_(std::vector< double > &peak_values) | PeakPickerCWT | protected | 
  | dlg_ | ProgressLogger | mutableprotected | 
  | end_ | ProgressLogger | mutableprotected | 
  | endProgress() const | ProgressLogger |  | 
  | error_name_ | DefaultParamHandler | protected | 
  | estimatePeakWidth(const MSExperiment<> &input) | PeakPickerCWT |  | 
  | fitPeakShape_(const PeakArea_ &area, bool enable_centroid_fit) | PeakPickerCWT | protected | 
  | fwhm_bound_ | PeakPickerCWT | protected | 
  | getDefaults() const | DefaultParamHandler |  | 
  | getLogType() const | ProgressLogger |  | 
  | getMaxPosition_(PeakIterator first, PeakIterator last, const ContinuousWaveletTransform &wt, PeakArea_ &area, Int distance_from_scan_border, Int ms_level, DoubleReal peak_bound_cwt, DoubleReal peak_bound_ms2_level_cwt, Int direction=1) | PeakPickerCWT | protected | 
  | getName() const | DefaultParamHandler |  | 
  | getNumberOfPeaks_(ConstPeakIterator first, ConstPeakIterator last, std::vector< double > &peak_values, Int direction, DoubleReal resolution, ContinuousWaveletTransformNumIntegration &wt, DoubleReal peak_bound_cwt) | PeakPickerCWT | protected | 
  | getParameters() const | DefaultParamHandler |  | 
  | getPeakArea_(const PeakArea_ &area, double &area_left, double &area_right) | PeakPickerCWT | protected | 
  | getPeakCentroid_(PeakArea_ &area) | PeakPickerCWT | protected | 
  | getPeakEndPoints_(PeakIterator first, PeakIterator last, PeakArea_ &area, Int distance_from_scan_border, Int &peak_left_index, Int &peak_right_index, ContinuousWaveletTransformNumIntegration &wt) | PeakPickerCWT | protected | 
  | getSubsections() const | DefaultParamHandler |  | 
  | GUI enum value | ProgressLogger |  | 
  | init_() | PeakPickerCWT | protected | 
  | initializeWT_(ContinuousWaveletTransformNumIntegration &wt, DoubleReal &peak_bound_cwt, DoubleReal &peak_bound_ms2_level_cwt) | PeakPickerCWT | protected | 
  | last_invoke_ | ProgressLogger | mutableprotected | 
  | LogType enum name | ProgressLogger |  | 
  | lorentz_(double height, double lambda, double pos, double x) | PeakPickerCWT | protected | 
  | noise_level_ | PeakPickerCWT | protected | 
  | NONE enum value | ProgressLogger |  | 
  | operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual | 
  | operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual | 
  | optimization_ | PeakPickerCWT | protected | 
  | param_ | DefaultParamHandler | protected | 
  | peak_bound_ | PeakPickerCWT | protected | 
  | peak_bound_ms2_level_ | PeakPickerCWT | protected | 
  | peak_corr_bound_ | PeakPickerCWT | protected | 
  | PeakIterator typedef | PeakPickerCWT |  | 
  | PeakPickerCWT() | PeakPickerCWT |  | 
  | pick(const MSSpectrum<> &input, MSSpectrum<> &output) | PeakPickerCWT |  | 
  | pickExperiment(const MSExperiment<> &input, MSExperiment<> &output) | PeakPickerCWT |  | 
  | ProgressLogger() | ProgressLogger |  | 
  | radius_ | PeakPickerCWT | protected | 
  | recursion_depth_ | ProgressLogger | protectedstatic | 
  | scale_ | PeakPickerCWT | protected | 
  | setLogType(LogType type) const | ProgressLogger |  | 
  | setName(const String &name) | DefaultParamHandler |  | 
  | setParameters(const Param ¶m) | DefaultParamHandler |  | 
  | setProgress(SignedSize value) const | ProgressLogger |  | 
  | signal_to_noise_ | PeakPickerCWT | protected | 
  | startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger |  | 
  | stop_watch_ | ProgressLogger | mutableprotected | 
  | subsections_ | DefaultParamHandler | protected | 
  | two_d_optimization_ | PeakPickerCWT | protected | 
  | type_ | ProgressLogger | mutableprotected | 
  | updateMembers_() | PeakPickerCWT | protectedvirtual | 
  | value_ | ProgressLogger | mutableprotected | 
  | warn_empty_defaults_ | DefaultParamHandler | protected | 
  | ~DefaultParamHandler() | DefaultParamHandler | virtual | 
  | ~PeakPickerCWT() | PeakPickerCWT | virtual | 
  | ~ProgressLogger() | ProgressLogger |  |