Base class for de novo identification. More...
#include <OpenMS/ANALYSIS/DENOVO/DeNovoIdentification.h>
 
  
 | Public Member Functions | |
| DeNovoIdentification & | operator= (const DeNovoIdentification &rhs) | 
| assignment operator  More... | |
| virtual void | getIdentifications (std::vector< PeptideIdentification > &ids, const RichPeakMap &exp)=0 | 
| performs an ProteinIdentification run on a RichPeakMap  More... | |
| virtual void | getIdentification (PeptideIdentification &id, const RichPeakSpectrum &spectrum)=0 | 
| performs an ProteinIdentification run on a PeakSpectrum  More... | |
| Constructors and destructors | |
| DeNovoIdentification () | |
| default constructor  More... | |
| virtual | ~DeNovoIdentification () | 
| destructor  More... | |
| DeNovoIdentification (const DeNovoIdentification &rhs) | |
| copy constructor  More... | |
|  Public Member Functions inherited from DefaultParamHandler | |
| DefaultParamHandler (const String &name) | |
| Constructor with name that is displayed in error messages.  More... | |
| DefaultParamHandler (const DefaultParamHandler &rhs) | |
| Copy constructor.  More... | |
| virtual | ~DefaultParamHandler () | 
| Destructor.  More... | |
| virtual DefaultParamHandler & | operator= (const DefaultParamHandler &rhs) | 
| Assignment operator.  More... | |
| virtual bool | operator== (const DefaultParamHandler &rhs) const | 
| Equality operator.  More... | |
| void | setParameters (const Param ¶m) | 
| Sets the parameters.  More... | |
| const Param & | getParameters () const | 
| Non-mutable access to the parameters.  More... | |
| const Param & | getDefaults () const | 
| Non-mutable access to the default parameters.  More... | |
| const String & | getName () const | 
| Non-mutable access to the name.  More... | |
| void | setName (const String &name) | 
| Mutable access to the name.  More... | |
| const std::vector< String > & | getSubsections () const | 
| Non-mutable access to the registered subsections.  More... | |
| Additional Inherited Members | |
|  Protected Member Functions inherited from DefaultParamHandler | |
| virtual void | updateMembers_ () | 
| This method is used to update extra member variables at the end of the setParameters() method.  More... | |
| void | defaultsToParam_ () | 
| Updates the parameters after the defaults have been set in the constructor.  More... | |
|  Protected Attributes inherited from DefaultParamHandler | |
| Param | param_ | 
| Container for current parameters.  More... | |
| Param | defaults_ | 
| Container for default parameters. This member should be filled in the constructor of derived classes!  More... | |
| std::vector< String > | subsections_ | 
| Container for registered subsections. This member should be filled in the constructor of derived classes!  More... | |
| String | error_name_ | 
| Name that is displayed in error messages during the parameter checking.  More... | |
| bool | check_defaults_ | 
| If this member is set to false no checking if parameters in done;.  More... | |
| bool | warn_empty_defaults_ | 
| If this member is set to false no warning is emitted when defaults are empty;.  More... | |
Base class for de novo identification.
default constructor
| 
 | virtual | 
destructor
| DeNovoIdentification | ( | const DeNovoIdentification & | rhs | ) | 
copy constructor
| 
 | pure virtual | 
performs an ProteinIdentification run on a PeakSpectrum
| 
 | pure virtual | 
performs an ProteinIdentification run on a RichPeakMap
| DeNovoIdentification& operator= | ( | const DeNovoIdentification & | rhs | ) | 
assignment operator
| OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:26 using doxygen 1.8.5 |