| add1DSignal_(Feature &feature, MSSimExperiment &experiment, MSSimExperiment &experiment_ct) | RawMSSignalSimulation | protected | 
  | add2DSignal_(Feature &feature, MSSimExperiment &experiment, MSSimExperiment &experiment_ct) | RawMSSignalSimulation | protected | 
  | addBaseLine_(MSSimExperiment &experiment, SimCoordinateType minimal_mz_measurement_limit) | RawMSSignalSimulation | protected | 
  | addDetectorNoise_(MSSimExperiment &experiment) | RawMSSignalSimulation | protected | 
  | addShotNoise_(MSSimExperiment &experiment, SimCoordinateType minimal_mz_measurement_limit, SimCoordinateType maximal_mz_measurement_limit) | RawMSSignalSimulation | protected | 
  | addWhiteNoise_(MSSimExperiment &experiment) | RawMSSignalSimulation | protected | 
  | begin_ | ProgressLogger | mutableprotected | 
  | check_defaults_ | DefaultParamHandler | protected | 
  | chooseElutionProfile_(EGHModel *const elutionmodel, Feature &feature, const double scale, const DoubleReal rt_sampling_rate, const MSSimExperiment &experiment) | RawMSSignalSimulation | protected | 
  | CMD enum value | ProgressLogger |  | 
  | compressSignals_(MSSimExperiment &experiment) | RawMSSignalSimulation | protected | 
  | contaminants_ | RawMSSignalSimulation | protected | 
  | contaminants_loaded_ | RawMSSignalSimulation | protected | 
  | createContaminants_(FeatureMapSim &contaminants, MSSimExperiment &exp, MSSimExperiment &exp_ct) | RawMSSignalSimulation | protected | 
  | DefaultParamHandler(const String &name) | DefaultParamHandler |  | 
  | DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |  | 
  | defaults_ | DefaultParamHandler | protected | 
  | defaultsToParam_() | DefaultParamHandler | protected | 
  | dlg_ | ProgressLogger | mutableprotected | 
  | end_ | ProgressLogger | mutableprotected | 
  | endProgress() const | ProgressLogger |  | 
  | error_name_ | DefaultParamHandler | protected | 
  | generateRawSignals(FeatureMapSim &features, MSSimExperiment &experiment, MSSimExperiment &experiment_ct, FeatureMapSim &contaminants) | RawMSSignalSimulation |  | 
  | getDefaults() const | DefaultParamHandler |  | 
  | getFeatureScaledIntensity_(const SimIntensityType feature_intensity, const SimIntensityType natural_scaling_factor) | RawMSSignalSimulation | protected | 
  | getLogType() const | ProgressLogger |  | 
  | getName() const | DefaultParamHandler |  | 
  | getParameters() const | DefaultParamHandler |  | 
  | getPeakWidth_(const DoubleReal mz, const bool is_gaussian) const | RawMSSignalSimulation | protected | 
  | getResolution_(const DoubleReal query_mz, const DoubleReal resolution, const RESOLUTIONMODEL model) const | RawMSSignalSimulation | protected | 
  | getSamplingGrid_(std::vector< SimCoordinateType > &grid, const SimCoordinateType mz_min, const SimCoordinateType mz_max, const Int step_Da) | RawMSSignalSimulation | protected | 
  | getSubsections() const | DefaultParamHandler |  | 
  | grid_ | RawMSSignalSimulation | protected | 
  | GUI enum value | ProgressLogger |  | 
  | IM_ALL enum value | RawMSSignalSimulation | protected | 
  | IM_ESI enum value | RawMSSignalSimulation | protected | 
  | IM_MALDI enum value | RawMSSignalSimulation | protected | 
  | intensity_scale_ | RawMSSignalSimulation | protected | 
  | intensity_scale_stddev_ | RawMSSignalSimulation | protected | 
  | IONIZATIONMETHOD enum name | RawMSSignalSimulation | protected | 
  | last_invoke_ | ProgressLogger | mutableprotected | 
  | loadContaminants() | RawMSSignalSimulation |  | 
  | LogType enum name | ProgressLogger |  | 
  | mz_error_mean_ | RawMSSignalSimulation | protected | 
  | mz_error_stddev_ | RawMSSignalSimulation | protected | 
  | NONE enum value | ProgressLogger |  | 
  | operator=(const RawMSSignalSimulation &source) | RawMSSignalSimulation |  | 
  | OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual | 
  | operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual | 
  | param_ | DefaultParamHandler | protected | 
  | PROFILESHAPE enum name | RawMSSignalSimulation | protected | 
  | ProgressLogger() | ProgressLogger |  | 
  | RawMSSignalSimulation(const SimRandomNumberGenerator &rng) | RawMSSignalSimulation |  | 
  | RawMSSignalSimulation(const RawMSSignalSimulation &source) | RawMSSignalSimulation |  | 
  | RawMSSignalSimulation() | RawMSSignalSimulation | protected | 
  | recursion_depth_ | ProgressLogger | protectedstatic | 
  | res_base_ | RawMSSignalSimulation | protected | 
  | RES_CONSTANT enum value | RawMSSignalSimulation | protected | 
  | RES_LINEAR enum value | RawMSSignalSimulation | protected | 
  | res_model_ | RawMSSignalSimulation | protected | 
  | RES_SQRT enum value | RawMSSignalSimulation | protected | 
  | RESOLUTIONMODEL enum name | RawMSSignalSimulation | protected | 
  | rnd_gen_ | RawMSSignalSimulation | protected | 
  | RT_GAUSSIAN enum value | RawMSSignalSimulation | protected | 
  | RT_RECTANGULAR enum value | RawMSSignalSimulation | protected | 
  | samplePeptideModel1D_(const IsotopeModel &iso, const SimCoordinateType mz_start, const SimCoordinateType mz_end, MSSimExperiment &experiment, MSSimExperiment &experiment_ct, Feature &activeFeature) | RawMSSignalSimulation | protected | 
  | samplePeptideModel2D_(const ProductModel< 2 > &pm, const SimCoordinateType mz_start, const SimCoordinateType mz_end, SimCoordinateType rt_start, SimCoordinateType rt_end, MSSimExperiment &experiment, MSSimExperiment &experiment_ct, Feature &activeFeature) | RawMSSignalSimulation | protected | 
  | sampling_points_per_FWHM_ | RawMSSignalSimulation | protected | 
  | setDefaultParams_() | RawMSSignalSimulation | protected | 
  | setLogType(LogType type) const | ProgressLogger |  | 
  | setName(const String &name) | DefaultParamHandler |  | 
  | setParameters(const Param ¶m) | DefaultParamHandler |  | 
  | setProgress(SignedSize value) const | ProgressLogger |  | 
  | startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger |  | 
  | stop_watch_ | ProgressLogger | mutableprotected | 
  | subsections_ | DefaultParamHandler | protected | 
  | THREADED_RANDOM_NUMBER_POOL_SIZE_ | RawMSSignalSimulation | protectedstatic | 
  | threaded_random_numbers_ | RawMSSignalSimulation | protected | 
  | threaded_random_numbers_index_ | RawMSSignalSimulation | protected | 
  | type_ | ProgressLogger | mutableprotected | 
  | updateMembers_() | RawMSSignalSimulation | protectedvirtual | 
  | value_ | ProgressLogger | mutableprotected | 
  | warn_empty_defaults_ | DefaultParamHandler | protected | 
  | ~DefaultParamHandler() | DefaultParamHandler | virtual | 
  | ~ProgressLogger() | ProgressLogger |  | 
  | ~RawMSSignalSimulation() | RawMSSignalSimulation | virtual |