| action_mode_ | SpectrumCanvas | protected | 
  | actionModeChange() | SpectrumCanvas | signal | 
  | ActionModes enum name | SpectrumCanvas |  | 
  | activateLayer(Size layer_index) | Spectrum1DCanvas | slot | 
  | activateSpectrum(Size index, bool repaint=true) | Spectrum1DCanvas |  | 
  | activeLayerIndex() const | SpectrumCanvas |  | 
  | addDataProcessing_(MSExperiment< PeakType > &map, DataProcessing::ProcessingAction action) const | SpectrumCanvas | inlineprotected | 
  | addLabelAnnotation_(const QPoint &screen_position, QString label_text) | Spectrum1DCanvas | protected | 
  | addLayer(ExperimentSharedPtrType map, const String &filename="") | SpectrumCanvas |  | 
  | addLayer(FeatureMapSharedPtrType map, const String &filename="") | SpectrumCanvas |  | 
  | addLayer(ConsensusMapSharedPtrType map, const String &filename="") | SpectrumCanvas |  | 
  | addLayer(std::vector< PeptideIdentification > &peptides, const String &filename="") | SpectrumCanvas |  | 
  | addPeakAnnotation(PeakIndex peak_index, QString text, QColor color) | Spectrum1DCanvas |  | 
  | addUserLabelAnnotation_(const QPoint &screen_position) | Spectrum1DCanvas | protected | 
  | addUserPeakAnnotation_(PeakIndex near_peak) | Spectrum1DCanvas | protected | 
  | adjustBuffer_() | SpectrumCanvas | protected | 
  | aligned_peaks_indices_ | Spectrum1DCanvas | protected | 
  | aligned_peaks_mz_delta_ | Spectrum1DCanvas | protected | 
  | alignment_layer_1_ | Spectrum1DCanvas | protected | 
  | alignment_layer_2_ | Spectrum1DCanvas | protected | 
  | alignment_score_ | Spectrum1DCanvas | protected | 
  | AM_MEASURE enum value | SpectrumCanvas |  | 
  | AM_TRANSLATE enum value | SpectrumCanvas |  | 
  | AM_ZOOM enum value | SpectrumCanvas |  | 
  | AreaType typedef | SpectrumCanvas |  | 
  | buffer_ | SpectrumCanvas | protected | 
  | changeLayerFilterState(Size i, bool b) | SpectrumCanvas | slot | 
  | changeLegendVisibility() | SpectrumCanvas | signal | 
  | changeVisibility(Size i, bool b) | SpectrumCanvas | slot | 
  | changeVisibleArea_(double lo, double hi, bool repaint=true, bool add_to_stack=false) | Spectrum1DCanvas | protected | 
  | changeVisibleArea_(const AreaType &new_area, bool repaint=true, bool add_to_stack=false) | Spectrum1DCanvas | protectedvirtual | 
  | check_defaults_ | DefaultParamHandler | protected | 
  | ConsensusMapSharedPtrType typedef | SpectrumCanvas |  | 
  | ConsensusMapType typedef | SpectrumCanvas |  | 
  | context_add_ | SpectrumCanvas | protected | 
  | contextMenuEvent(QContextMenuEvent *e) | Spectrum1DCanvas | protected | 
  | current_layer_ | SpectrumCanvas | protected | 
  | currentLayerParamtersChanged_() | Spectrum1DCanvas | protectedslot | 
  | currentPeakData_() | SpectrumCanvas | inlineprotected | 
  | dataToWidget(const PeakType &peak, QPoint &point, bool flipped=false, bool percentage=true) | Spectrum1DCanvas |  | 
  | dataToWidget(DoubleReal x, DoubleReal y, QPoint &point, bool flipped=false, bool percentage=false) | Spectrum1DCanvas |  | 
  | dataToWidget_(DoubleReal x, DoubleReal y, QPoint &point) | SpectrumCanvas | inlineprotected | 
  | DefaultParamHandler(const String &name) | DefaultParamHandler |  | 
  | DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler |  | 
  | defaults_ | DefaultParamHandler | protected | 
  | defaultsToParam_() | DefaultParamHandler | protected | 
  | DM_CONNECTEDLINES enum value | Spectrum1DCanvas |  | 
  | DM_PEAKS enum value | Spectrum1DCanvas |  | 
  | draw_modes_ | Spectrum1DCanvas | protected | 
  | drawAlignment(QPainter &painter) | Spectrum1DCanvas |  | 
  | drawAnnotations(Size layer_index, QPainter &painter) | Spectrum1DCanvas |  | 
  | drawCoordinates_(QPainter &painter, const PeakIndex &peak) | Spectrum1DCanvas | protected | 
  | drawDashedLine_(const QPoint &from, const QPoint &to, QPainter &painter) | Spectrum1DCanvas | protected | 
  | drawDeltas_(QPainter &painter, const PeakIndex &start, const PeakIndex &end) | Spectrum1DCanvas | protected | 
  | drawHighlightedPeak_(Size layer_index, const PeakIndex &peak, QPainter &painter, bool draw_elongation=false) | Spectrum1DCanvas | protected | 
  | DrawModes enum name | Spectrum1DCanvas |  | 
  | drawText_(QPainter &painter, QStringList text) | SpectrumCanvas | protected | 
  | ensureAnnotationsWithinDataRange_() | Spectrum1DCanvas | protected | 
  | enterEvent(QEvent *e) | SpectrumCanvas | protected | 
  | error_name_ | DefaultParamHandler | protected | 
  | ExperimentSharedPtrType typedef | SpectrumCanvas |  | 
  | ExperimentType typedef | SpectrumCanvas |  | 
  | FeatureMapSharedPtrType typedef | SpectrumCanvas |  | 
  | FeatureMapType typedef | SpectrumCanvas |  | 
  | FeatureType typedef | SpectrumCanvas |  | 
  | findPeakAtPosition_(QPoint) | Spectrum1DCanvas | protected | 
  | finishAdding_() | Spectrum1DCanvas | protectedvirtual | 
  | flipLayer(Size index) | Spectrum1DCanvas |  | 
  | flippedLayersExist() | Spectrum1DCanvas |  | 
  | focusOutEvent(QFocusEvent *e) | SpectrumCanvas | protected | 
  | getActionMode() const | SpectrumCanvas | inline | 
  | getAlignedPeaksIndices() | Spectrum1DCanvas |  | 
  | getAlignmentScore() | Spectrum1DCanvas |  | 
  | getAlignmentSize() | Spectrum1DCanvas |  | 
  | getCurrentLayer() const | SpectrumCanvas | inline | 
  | getCurrentLayer() | SpectrumCanvas | inline | 
  | getCurrentLayer_() | SpectrumCanvas | inlineprotected | 
  | getCurrentLayerIndex() const | SpectrumCanvas | inline | 
  | getCurrentMaxIntensity() const | SpectrumCanvas | inline | 
  | getCurrentMinIntensity() const | SpectrumCanvas | inline | 
  | getDataRange() | SpectrumCanvas |  | 
  | getDefaults() const | DefaultParamHandler |  | 
  | getDrawMode() const | Spectrum1DCanvas |  | 
  | getIdentificationMZ_(const Size layer_index, const PeptideIdentification &peptide) const | SpectrumCanvas | protected | 
  | getIntensityMode() const | SpectrumCanvas | inline | 
  | getLayer(Size index) const | SpectrumCanvas | inline | 
  | getLayer_(Size index) | SpectrumCanvas | inlineprotected | 
  | getLayerCount() const | SpectrumCanvas | inline | 
  | getLayerFlag(LayerData::Flags f) const | SpectrumCanvas | inline | 
  | getLayerFlag(Size layer, LayerData::Flags f) const | SpectrumCanvas | inline | 
  | getLayerName(Size i) | SpectrumCanvas |  | 
  | getMaxIntensity(Size index) const | SpectrumCanvas | inline | 
  | getMinIntensity(Size index) const | SpectrumCanvas | inline | 
  | getName() const | DefaultParamHandler |  | 
  | getParameters() const | DefaultParamHandler |  | 
  | getPercentageFactor() | SpectrumCanvas |  | 
  | getSnapFactor() | SpectrumCanvas |  | 
  | getSpectrumWidget() const | SpectrumCanvas | inline | 
  | getSubsections() const | DefaultParamHandler |  | 
  | getVisibleArea() const | SpectrumCanvas | inline | 
  | getVisibleConsensusData(ConsensusMapType &map) const | SpectrumCanvas | slot | 
  | getVisibleFeatureData(FeatureMapType &map) const | SpectrumCanvas | slot | 
  | getVisibleIdentifications(std::vector< PeptideIdentification > &peptides) const | SpectrumCanvas | slot | 
  | getVisiblePeakData(ExperimentType &map) const | SpectrumCanvas | slot | 
  | gridLinesShown() const | SpectrumCanvas | inline | 
  | horizontalScrollBarChange(int value) | Spectrum1DCanvas | virtualslot | 
  | IM_LOG enum value | SpectrumCanvas |  | 
  | IM_NONE enum value | SpectrumCanvas |  | 
  | IM_PERCENTAGE enum value | SpectrumCanvas |  | 
  | IM_SNAP enum value | SpectrumCanvas |  | 
  | intensity_mode_ | SpectrumCanvas | protected | 
  | intensityModeChange_() | Spectrum1DCanvas | protectedvirtual | 
  | IntensityModes enum name | SpectrumCanvas |  | 
  | is_swapped_ | Spectrum1DCanvas | protected | 
  | isMzToXAxis() | SpectrumCanvas | inline | 
  | keyPressEvent(QKeyEvent *e) | Spectrum1DCanvas | protected | 
  | keyReleaseEvent(QKeyEvent *e) | SpectrumCanvas | protected | 
  | LabelMode enum name | Spectrum1DCanvas |  | 
  | last_mouse_pos_ | SpectrumCanvas | protected | 
  | layerActivated(QWidget *w) | SpectrumCanvas | signal | 
  | layerModficationChange(Size layer, bool modified) | SpectrumCanvas | signal | 
  | layers_ | SpectrumCanvas | protected | 
  | layerZoomChanged(QWidget *w) | SpectrumCanvas | signal | 
  | leaveEvent(QEvent *e) | SpectrumCanvas | protected | 
  | LM_XABSOLUTE_YABSOLUTE enum value | Spectrum1DCanvas |  | 
  | LM_XABSOLUTE_YPERCENT enum value | Spectrum1DCanvas |  | 
  | LM_XPERCENT_YABSOLUTE enum value | Spectrum1DCanvas |  | 
  | LM_XPERCENT_YPERCENT enum value | Spectrum1DCanvas |  | 
  | measurement_start_ | SpectrumCanvas | protected | 
  | measurement_start_point_ | Spectrum1DCanvas | protected | 
  | mirror_mode_ | Spectrum1DCanvas | protected | 
  | mirrorModeActive() | Spectrum1DCanvas |  | 
  | modificationStatus_(Size layer_index, bool modified) | SpectrumCanvas | protected | 
  | mouseMoveEvent(QMouseEvent *e) | Spectrum1DCanvas | protected | 
  | mousePressEvent(QMouseEvent *e) | Spectrum1DCanvas | protected | 
  | mouseReleaseEvent(QMouseEvent *e) | Spectrum1DCanvas | protected | 
  | moving_annotations_ | Spectrum1DCanvas | protected | 
  | mz_to_x_axis_ | SpectrumCanvas | protected | 
  | mzToXAxis(bool mz_to_x_axis) | SpectrumCanvas |  | 
  | operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual | 
  | operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual | 
  | overall_data_range_ | SpectrumCanvas | protected | 
  | paint(QPainter *paint_device, QPaintEvent *e) | Spectrum1DCanvas |  | 
  | paintEvent(QPaintEvent *e) | Spectrum1DCanvas | protected | 
  | paintGridLines_(QPainter &painter) | Spectrum1DCanvas | protectedvirtual | 
  | param_ | DefaultParamHandler | protected | 
  | peak_penstyle_ | Spectrum1DCanvas | protected | 
  | PeakType typedef | SpectrumCanvas |  | 
  | percentage_factor_ | SpectrumCanvas | protected | 
  | performAlignment(Size layer_index_1, Size layer_index_2, const Param ¶m) | Spectrum1DCanvas |  | 
  | PointType typedef | SpectrumCanvas |  | 
  | preferencesChange() | SpectrumCanvas | signal | 
  | recalculateAxes() | SpectrumCanvas | signal | 
  | recalculateRanges_(UInt mz_dim, UInt rt_dim, UInt it_dim) | SpectrumCanvas | protected | 
  | recalculateSnapFactor_() | Spectrum1DCanvas | protectedvirtual | 
  | removeLayer(Size layer_index) | Spectrum1DCanvas | slot | 
  | resetAlignment() | Spectrum1DCanvas |  | 
  | resetZoom(bool repaint=true) | SpectrumCanvas | slot | 
  | resizeEvent(QResizeEvent *e) | SpectrumCanvas | protected | 
  | rubber_band_ | SpectrumCanvas | protected | 
  | saveCurrentLayer(bool visible) | Spectrum1DCanvas | virtual | 
  | selected_peak_ | SpectrumCanvas | protected | 
  | sendCursorStatus(double mz=-1.0, double rt=-1.0) | SpectrumCanvas | signal | 
  | sendStatusMessage(std::string message, OpenMS::UInt time) | SpectrumCanvas | signal | 
  | setAdditionalContextMenu(QMenu *menu) | SpectrumCanvas | slot | 
  | setCurrentLayerParameters(const Param ¶m) | SpectrumCanvas | inline | 
  | setCurrentLayerPeakPenStyle(Qt::PenStyle ps) | Spectrum1DCanvas |  | 
  | setDrawMode(DrawModes mode) | Spectrum1DCanvas |  | 
  | setFilters(const DataFilters &filters) | SpectrumCanvas | virtual | 
  | setIntensityMode(IntensityModes mod) | SpectrumCanvas | inline | 
  | setLabel(LayerData::LabelType label) | SpectrumCanvas | inline | 
  | setLayerFlag(LayerData::Flags f, bool value) | SpectrumCanvas | inline | 
  | setLayerFlag(Size layer, LayerData::Flags f, bool value) | SpectrumCanvas | inline | 
  | setLayerName(Size i, const String &name) | SpectrumCanvas |  | 
  | setMirrorModeActive(bool b) | Spectrum1DCanvas |  | 
  | setName(const String &name) | DefaultParamHandler |  | 
  | setParameters(const Param ¶m) | DefaultParamHandler |  | 
  | setSpectrumWidget(SpectrumWidget *widget) | SpectrumCanvas | inline | 
  | setSwappedAxis(bool swapped) | Spectrum1DCanvas |  | 
  | setVisibleArea(DRange< 2 > range) | Spectrum1DCanvas | slot | 
  | show_alignment_ | Spectrum1DCanvas | protected | 
  | show_grid_ | SpectrumCanvas | protected | 
  | show_timing_ | SpectrumCanvas | protected | 
  | showCurrentLayerPreferences() | Spectrum1DCanvas | virtual | 
  | showCurrentPeaksAs2D() | Spectrum1DCanvas | signal | 
  | showCurrentPeaksAs3D() | Spectrum1DCanvas | signal | 
  | showGridLines(bool show) | SpectrumCanvas | slot | 
  | showMetaData(bool modifiable=false, Int index=-1) | SpectrumCanvas | virtual | 
  | snap_factors_ | SpectrumCanvas | protected | 
  | Spectrum1DCanvas(const Param &preferences, QWidget *parent=0) | Spectrum1DCanvas |  | 
  | spectrum_widget_ | SpectrumCanvas | protected | 
  | SpectrumCanvas(const Param &preferences, QWidget *parent=0) | SpectrumCanvas |  | 
  | SpectrumConstIteratorType typedef | SpectrumCanvas |  | 
  | SpectrumType typedef | SpectrumCanvas |  | 
  | subsections_ | DefaultParamHandler | protected | 
  | translateBackward_() | SpectrumCanvas | protectedvirtual | 
  | translateForward_() | SpectrumCanvas | protectedvirtual | 
  | translateLeft_() | Spectrum1DCanvas | protectedvirtual | 
  | translateRight_() | Spectrum1DCanvas | protectedvirtual | 
  | update_(const char *caller_name) | SpectrumCanvas | protectedvirtual | 
  | update_buffer_ | SpectrumCanvas | protected | 
  | updateCursor_() | SpectrumCanvas | protectedslot | 
  | updateHScrollbar(float, float, float, float) | SpectrumCanvas | signal | 
  | updateLayer(Size i) | Spectrum1DCanvas | virtualslot | 
  | updateMembers_() | DefaultParamHandler | protectedvirtual | 
  | updatePercentageFactor_(Size layer_index) | Spectrum1DCanvas | protected | 
  | updateScrollbars_() | Spectrum1DCanvas | protectedvirtual | 
  | updateVScrollbar(float, float, float, float) | SpectrumCanvas | signal | 
  | verticalScrollBarChange(int value) | SpectrumCanvas | virtualslot | 
  | visible_area_ | SpectrumCanvas | protected | 
  | visibleAreaChanged(DRange< 2 > area) | SpectrumCanvas | signal | 
  | warn_empty_defaults_ | DefaultParamHandler | protected | 
  | wheelEvent(QWheelEvent *e) | SpectrumCanvas | protected | 
  | widgetToData(const QPoint &pos, bool percentage=false) | Spectrum1DCanvas |  | 
  | widgetToData(DoubleReal x, DoubleReal y, bool percentage=false) | Spectrum1DCanvas |  | 
  | widgetToData_(DoubleReal x, DoubleReal y) | SpectrumCanvas | inlineprotected | 
  | widgetToData_(const QPoint &pos) | SpectrumCanvas | inlineprotected | 
  | zoom_(int x, int y, bool zoom_in) | Spectrum1DCanvas | protectedvirtual | 
  | zoom_pos_ | SpectrumCanvas | protected | 
  | zoom_stack_ | SpectrumCanvas | protected | 
  | zoomAdd_(const AreaType &area) | SpectrumCanvas | protected | 
  | zoomBack_() | SpectrumCanvas | protected | 
  | zoomClear_() | SpectrumCanvas | protected | 
  | zoomForward_() | Spectrum1DCanvas | protectedvirtual | 
  | ~DefaultParamHandler() | DefaultParamHandler | virtual | 
  | ~Spectrum1DCanvas() | Spectrum1DCanvas | virtual | 
  | ~SpectrumCanvas() | SpectrumCanvas | virtual |