#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/LCMS.h>
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|  | ~LCMS () | 
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|  | LCMS (std::string) | 
|  | 
|  | LCMS () | 
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|  | LCMS (const LCMS *) | 
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|  | LCMS (const LCMS &) | 
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| void | show_info () | 
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| LCMS & | operator= (const LCMS &) | 
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| void | order_by_mass () | 
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| float | compare_feature_mass (const void *, const void *) | 
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| void | tag_peaks_with_spectrum_ID () | 
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| int | get_nb_common_peaks (int) | 
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| void | clear_feature_list () | 
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| std::vector< SHFeature > | get_feature_list () | 
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| std::vector< SHFeature > * | get_feature_list_reference () | 
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| bool | check_feature_list_empty () | 
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| std::vector< SHFeature >::iterator | get_feature_list_begin () | 
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| std::vector< SHFeature >::iterator | get_feature_list_end () | 
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| void | add_feature (SHFeature *IN) | 
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| void | remove_feature_by_ID (SHFeature *) | 
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| void | remove_feature_by_ID (int) | 
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| void | remove_feature (SHFeature *) | 
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| void | remove_feature (int i) | 
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| std::vector< SHFeature >::iterator | remove_feature_from_list (std::vector< SHFeature >::iterator IN) | 
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| unsigned int | get_nb_features () | 
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| std::string | get_spec_name () | 
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| void | set_spec_name (std::string IN) | 
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| int | get_spectrum_ID () | 
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| void | set_spectrum_ID (int IN) | 
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| void | setFeatureLCMSID () | 
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| SHFeature * | find_feature_by_ID (int) | 
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| void | remove_raw_spec_name (int ID) | 
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| void | add_raw_spec_name (int ID, std::string name) | 
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| bool | check_raw_spec_name_empty () | 
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| std::map< int, std::string > ::iterator
 | get_raw_spec_name_start () | 
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| std::map< int, std::string > ::iterator
 | get_raw_spec_name_end () | 
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| std::map< int, std::string > | get_raw_spec_name_map () | 
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| int | get_nb_raw_specs () | 
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| std::string | get_raw_spec_name (int ID) | 
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| bool | check_LCMS_name (std::string) | 
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| bool | find_LC_MS_by_ID (int) | 
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| void | add_raw_spec_name_map (std::map< int, std::string > IN) | 
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| int | get_nb_identified_features () | 
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| int | get_nb_identified_features (double PepProb_T) | 
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| void | add_alignment_error (double TR, double ERROR_UP, double ERROR_DOWN) | 
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| void | get_alignment_error (double, double *, double *) | 
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| void | set_MASTER_ID (int IN) | 
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| int | get_MASTER_ID () | 
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          | void add_raw_spec_name | ( | int | ID, |  
          |  |  | std::string | name |  
          |  | ) |  |  |  | inline | 
 
 
  
  | 
        
          | void add_raw_spec_name_map | ( | std::map< int, std::string > | IN | ) |  |  | inline | 
 
 
  
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          | bool check_feature_list_empty | ( |  | ) |  |  | inline | 
 
 
      
        
          | bool check_LCMS_name | ( | std::string |  | ) |  | 
      
 
 
  
  | 
        
          | bool check_raw_spec_name_empty | ( |  | ) |  |  | inline | 
 
 
  
  | 
        
          | void clear_feature_list | ( |  | ) |  |  | inline | 
 
 
      
        
          | float compare_feature_mass | ( | const void * | , | 
        
          |  |  | const void * |  | 
        
          |  | ) |  |  | 
      
 
 
      
        
          | bool find_LC_MS_by_ID | ( | int |  | ) |  | 
      
 
 
  
  | 
        
          | std::vector<SHFeature>::iterator get_feature_list_begin | ( |  | ) |  |  | inline | 
 
 
  
  | 
        
          | std::vector<SHFeature>::iterator get_feature_list_end | ( |  | ) |  |  | inline | 
 
 
  
  | 
        
          | std::vector<SHFeature>* get_feature_list_reference | ( |  | ) |  |  | inline | 
 
 
      
        
          | int get_nb_common_peaks | ( | int |  | ) |  | 
      
 
 
  
  | 
        
          | unsigned int get_nb_features | ( |  | ) |  |  | inline | 
 
 
  
  | 
        
          | int get_nb_identified_features | ( |  | ) |  |  | inline | 
 
 
  
  | 
        
          | int get_nb_identified_features | ( | double | PepProb_T | ) |  |  | inline | 
 
 
  
  | 
        
          | std::string get_raw_spec_name | ( | int | ID | ) |  |  | inline | 
 
 
  
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          | std::map<int, std::string>::iterator get_raw_spec_name_end | ( |  | ) |  |  | inline | 
 
 
  
  | 
        
          | std::map<int, std::string> get_raw_spec_name_map | ( |  | ) |  |  | inline | 
 
 
  
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          | std::map<int, std::string>::iterator get_raw_spec_name_start | ( |  | ) |  |  | inline | 
 
 
  
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          | std::string get_spec_name | ( |  | ) |  |  | inline | 
 
 
  
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          | void remove_feature | ( | int | i | ) |  |  | inline | 
 
 
      
        
          | void remove_feature_by_ID | ( | int |  | ) |  | 
      
 
 
  
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          | std::vector<SHFeature>::iterator remove_feature_from_list | ( | std::vector< SHFeature >::iterator | IN | ) |  |  | inline | 
 
 
  
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          | void remove_raw_spec_name | ( | int | ID | ) |  |  | inline | 
 
 
  
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          | void set_MASTER_ID | ( | int | IN | ) |  |  | inline | 
 
 
  
  | 
        
          | void set_spec_name | ( | std::string | IN | ) |  |  | inline | 
 
 
  
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          | void set_spectrum_ID | ( | int | IN | ) |  |  | inline | 
 
 
      
        
          | void setFeatureLCMSID | ( |  | ) |  | 
      
 
 
  
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          | void tag_peaks_with_spectrum_ID | ( |  | ) |  |  | inline | 
 
 
  
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          | double MINIMAL_PEP_PROPHET_THERSHOLD |  | static | 
 
 
  
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          | std::map<int, std::string> raw_spec_names |  | private |